SMTL ID : 7wfy.1

Crystal Structure of the VAV2 SH2 domain in complex with APP phosphorylated peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

1 x ASN- GLY- PTR- GLU- ASN- PRO- THR: Amyloid beta A4 protein-binding family B member 1 (protein)(Non-covalent)

ASN-GLY-PTR-GLU-ASN-PRO-THR.1: 14 residues within 4Å: Chain A: R.26, R.44, R.46, A.54, K.64, H.65, I.66, K.67, I.77, T.78, S.101, F.102, K.103, Q.104 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:A.54, A:H.65, A:K.67, A:F.102 Hydrogen bonds: A:R.26, A:R.26, A:H.65, A:H.65, A:S.101, A:K.103, A:Q.104, A:Q.104 Water bridges: A:R.46 Salt bridges: A:R.26, A:R.44, A:R.46, A:K.64 pi-Cation interactions: A:R.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Vav2 is a novel APP-interacting protein that regulates APP protein level. Sci Rep (2022)

Release Date

2022-12-07

Peptides

Guanine nucleotide exchange factor VAV2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Guanine nucleotide exchange factor VAV2