SMTL ID : 7wgc.1

Neutral Omicron Spike Trimer in complex with ACE2.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: K.398, S.402, D.525, N.528 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.402, A:S.402, A:S.402, A:N.528 NAG.2: 1 residues within 4Å: Chain A: N.72 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain A: V.298, N.304 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain A: N.35, T.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.35 NAG.5: 3 residues within 4Å: Chain B: N.340, L.368, P.370 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cui, Z. et al., Structural and functional characterizations of infectivity and immune evasion of SARS-CoV-2 Omicron. Cell (2022)

Release Date

2022-06-22

Peptides

Processed angiotensin-converting enzyme 2: A
Spike glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Processed angiotensin-converting enzyme 2

Spike glycoprotein

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