SMTL ID : 7wh0.1

structure of C elegans BCMO-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: H.195, H.257, H.328, H.542 Ligands: OXD.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.195, A:H.257, A:H.328, A:H.542 FE.4: 5 residues within 4Å: Chain B: H.195, H.257, H.328, H.542 Ligands: OXD.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.195, B:H.257, B:H.328, B:H.542

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: F.33, E.34, V.36, F.80, E.534, R.536 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.34, A:E.34, A:R.536, A:R.536, A:R.536 Water bridges: A:E.34, A:E.534 GOL.5: 6 residues within 4Å: Chain B: F.33, E.34, V.36, F.80, E.534, R.536 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.34, B:R.536, B:R.536, B:R.536 Water bridges: B:A.535

2 x OXD: OXALIC ACID(Non-covalent)

OXD.3: 9 residues within 4Å: Chain A: F.75, V.149, H.195, H.257, H.328, F.428, F.541, H.542 Ligands: FE.1 5 PLIP interactions: 5 interactions with chain A Salt bridges: A:H.257, A:H.257, A:H.328, A:H.542, A:H.542 OXD.6: 9 residues within 4Å: Chain B: F.75, V.149, H.195, H.257, H.328, F.428, F.541, H.542 Ligands: FE.4 6 PLIP interactions: 6 interactions with chain B Salt bridges: B:H.195, B:H.257, B:H.257, B:H.328, B:H.542, B:H.542

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pan, W. et al., Structural and Functional Analysis of Nonheme Iron Enzymes BCMO-1 and BCMO-2 from Caenorhabditis elegans . Front Mol Biosci (2022)

Release Date

2022-02-02

Peptides

Beta-Carotene 15,15'-MonoOxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-Carotene 15,15'-MonoOxygenase