SMTL ID : 7wku.2 (5 other biounits)

Structure of PDCoV Mpro in complex with an inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x 02J- ALA- VAL- LEU- PJE- 010: N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE(Non-covalent)

02J-ALA-VAL-LEU-PJE-010.1: 22 residues within 4Å: Chain A: S.26, A.27, L.28, H.42, K.46, F.140, L.141, N.142, G.143, A.144, C.145, H.163, H.164, I.165, E.166, F.167, H.172, D.187, E.188, E.189, V.190, I.191 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:K.46, A:E.166, A:F.167, A:E.189 Hydrogen bonds: A:G.143, A:C.145, A:H.164, A:E.166, A:E.166, A:E.166, A:E.166, A:E.189 Salt bridges: A:H.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., The Structure of the Porcine Deltacoronavirus Main Protease Reveals a Conserved Target for the Design of Antivirals. Viruses (2022)

Release Date

2022-05-25

Peptides

Peptidase C30: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peptidase C30

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