SMTL ID : 7wlt.1

the Curved Structure of mPIEZO1 in Lipid Bilayer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

21 x PLX: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL(Non-covalent)

PLX.1: 6 residues within 4Å: Chain A: H.1686, L.1979, I.2088, A.2091, L.2092, Y.2095 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.1979, A:I.2088, A:A.2091, A:L.2092, A:L.2092 PLX.2: 12 residues within 4Å: Chain A: A.1156, V.1157, R.1159, Y.1160, L.1161, W.1163, L.1164, Y.1680, M.1791, F.1794, F.1795, S.1798 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.1157, A:L.1161, A:W.1163, A:L.1164, A:F.1794, A:F.1795, A:F.1795 Hydrogen bonds: A:S.1798 Salt bridges: A:R.1159 PLX.3: 9 residues within 4Å: Chain A: F.1194, K.1727, M.1731, T.1732, V.1735, M.1740, R.1797, W.1806 Ligands: PLX.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.1735, A:V.1735 Salt bridges: A:K.1727, A:K.1727 PLX.4: 7 residues within 4Å: Chain A: V.1709, W.1717, S.1726, R.1728, L.1774, F.1962 Ligands: PLX.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.1709, A:W.1717, A:L.1774 Hydrogen bonds: A:S.1726 Salt bridges: A:R.1728, A:R.1728 PLX.5: 8 residues within 4Å: Chain A: G.1183, A.1187, Y.1190, L.1191, L.1209, C.1212, L.1213, L.1215 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.1187, A:Y.1190, A:Y.1190, A:Y.1190, A:L.1191, A:L.1213, A:L.1215 PLX.8: 10 residues within 4Å: Chain A: Y.2189, I.2196, L.2197 Chain B: I.2033, A.2036, L.2037, R.2040, T.2042, L.2044, W.2142 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:I.2033, B:I.2033, B:A.2036, B:L.2037, B:W.2142, A:Y.2189, A:I.2196, A:L.2197 Hydrogen bonds: B:T.2042 PLX.9: 10 residues within 4Å: Chain A: S.2148, L.2149, S.2150 Chain C: T.2171, L.2194, I.2195, F.2198, A.2201, F.2484, F.2485 12 PLIP interactions: 3 interactions with chain A, 9 interactions with chain C Hydrogen bonds: A:S.2148, A:S.2148, A:S.2150 Hydrophobic interactions: C:L.2194, C:L.2194, C:I.2195, C:F.2198, C:F.2198, C:F.2198, C:A.2201, C:F.2484, C:F.2485 PLX.10: 10 residues within 4Å: Chain A: T.2171, L.2194, I.2195, F.2198, A.2201, F.2484, F.2485 Chain B: S.2148, L.2149, S.2150 12 PLIP interactions: 9 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:L.2194, A:L.2194, A:I.2195, A:F.2198, A:F.2198, A:F.2198, A:A.2201, A:F.2484, A:F.2485 Hydrogen bonds: B:S.2148, B:S.2148, B:S.2150 PLX.11: 6 residues within 4Å: Chain B: H.1686, L.1979, I.2088, A.2091, L.2092, Y.2095 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.1979, B:I.2088, B:A.2091, B:L.2092, B:L.2092 PLX.12: 12 residues within 4Å: Chain B: A.1156, V.1157, R.1159, Y.1160, L.1161, W.1163, L.1164, Y.1680, M.1791, F.1794, F.1795, S.1798 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:V.1157, B:L.1161, B:W.1163, B:L.1164, B:F.1794, B:F.1795, B:F.1795 Hydrogen bonds: B:S.1798 Salt bridges: B:R.1159 PLX.13: 9 residues within 4Å: Chain B: F.1194, K.1727, M.1731, T.1732, V.1735, M.1740, R.1797, W.1806 Ligands: PLX.14 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.1735, B:V.1735 Salt bridges: B:K.1727, B:K.1727 PLX.14: 7 residues within 4Å: Chain B: V.1709, W.1717, S.1726, R.1728, L.1774, F.1962 Ligands: PLX.13 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.1709, B:W.1717, B:L.1774 Hydrogen bonds: B:S.1726 Salt bridges: B:R.1728, B:R.1728 PLX.15: 8 residues within 4Å: Chain B: G.1183, A.1187, Y.1190, L.1191, L.1209, C.1212, L.1213, L.1215 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:A.1187, B:Y.1190, B:Y.1190, B:Y.1190, B:L.1191, B:L.1213, B:L.1215 PLX.18: 10 residues within 4Å: Chain B: Y.2189, I.2196, L.2197 Chain C: I.2033, A.2036, L.2037, R.2040, T.2042, L.2044, W.2142 9 PLIP interactions: 3 interactions with chain B, 6 interactions with chain C Hydrophobic interactions: B:Y.2189, B:I.2196, B:L.2197, C:I.2033, C:I.2033, C:A.2036, C:L.2037, C:W.2142 Hydrogen bonds: C:T.2042 PLX.19: 10 residues within 4Å: Chain A: I.2033, A.2036, L.2037, R.2040, T.2042, L.2044, W.2142 Chain C: Y.2189, I.2196, L.2197 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:I.2033, A:I.2033, A:A.2036, A:L.2037, A:W.2142, C:Y.2189, C:I.2196, C:L.2197 Hydrogen bonds: A:T.2042 PLX.20: 10 residues within 4Å: Chain B: T.2171, L.2194, I.2195, F.2198, A.2201, F.2484, F.2485 Chain C: S.2148, L.2149, S.2150 12 PLIP interactions: 9 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: B:L.2194, B:L.2194, B:I.2195, B:F.2198, B:F.2198, B:F.2198, B:A.2201, B:F.2484, B:F.2485 Hydrogen bonds: C:S.2148, C:S.2148, C:S.2150 PLX.21: 6 residues within 4Å: Chain C: H.1686, L.1979, I.2088, A.2091, L.2092, Y.2095 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:L.1979, C:I.2088, C:A.2091, C:L.2092, C:L.2092 PLX.22: 12 residues within 4Å: Chain C: A.1156, V.1157, R.1159, Y.1160, L.1161, W.1163, L.1164, Y.1680, M.1791, F.1794, F.1795, S.1798 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:V.1157, C:L.1161, C:W.1163, C:L.1164, C:F.1794, C:F.1795, C:F.1795 Hydrogen bonds: C:S.1798 Salt bridges: C:R.1159 PLX.23: 9 residues within 4Å: Chain C: F.1194, K.1727, M.1731, T.1732, V.1735, M.1740, R.1797, W.1806 Ligands: PLX.24 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:V.1735, C:V.1735 Salt bridges: C:K.1727, C:K.1727 PLX.24: 7 residues within 4Å: Chain C: V.1709, W.1717, S.1726, R.1728, L.1774, F.1962 Ligands: PLX.23 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:V.1709, C:W.1717, C:L.1774 Hydrogen bonds: C:S.1726 Salt bridges: C:R.1728, C:R.1728 PLX.25: 8 residues within 4Å: Chain C: G.1183, A.1187, Y.1190, L.1191, L.1209, C.1212, L.1213, L.1215 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:A.1187, C:Y.1190, C:Y.1190, C:Y.1190, C:L.1191, C:L.1213, C:L.1215

3 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)

PEE.6: 16 residues within 4Å: Chain A: Y.1977, F.1981, I.1992, F.2028, R.2035, Y.2038, G.2107, F.2109, F.2125, V.2128, P.2129, L.2131, L.2134, R.2135, M.2138 Chain C: I.2203 20 PLIP interactions: 19 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:F.1981, A:F.1981, A:F.1981, A:I.1992, A:F.2028, A:F.2028, A:F.2109, A:F.2125, A:F.2125, A:V.2128, A:L.2131, A:L.2131, A:L.2134, A:R.2135, C:I.2203 Hydrogen bonds: A:Y.2038, A:F.2109 Salt bridges: A:R.2035, A:R.2035, A:R.2135 PEE.16: 16 residues within 4Å: Chain A: I.2203 Chain B: Y.1977, F.1981, I.1992, F.2028, R.2035, Y.2038, G.2107, F.2109, F.2125, V.2128, P.2129, L.2131, L.2134, R.2135, M.2138 20 PLIP interactions: 19 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.1981, B:F.1981, B:F.1981, B:I.1992, B:F.2028, B:F.2028, B:F.2109, B:F.2125, B:F.2125, B:V.2128, B:L.2131, B:L.2131, B:L.2134, B:R.2135, A:I.2203 Hydrogen bonds: B:Y.2038, B:F.2109 Salt bridges: B:R.2035, B:R.2035, B:R.2135 PEE.26: 16 residues within 4Å: Chain B: I.2203 Chain C: Y.1977, F.1981, I.1992, F.2028, R.2035, Y.2038, G.2107, F.2109, F.2125, V.2128, P.2129, L.2131, L.2134, R.2135, M.2138 20 PLIP interactions: 19 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:F.1981, C:F.1981, C:F.1981, C:I.1992, C:F.2028, C:F.2028, C:F.2109, C:F.2125, C:F.2125, C:V.2128, C:L.2131, C:L.2131, C:L.2134, C:R.2135, B:I.2203 Hydrogen bonds: C:Y.2038, C:F.2109 Salt bridges: C:R.2035, C:R.2035, C:R.2135

3 x P5S: O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine(Non-covalent)

P5S.7: 12 residues within 4Å: Chain A: C.977, F.981, K.988, F.989, L.1153, V.1157, L.1292, R.1295, I.1296, L.1298, S.1299, Y.1301 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.981, A:F.981, A:F.989, A:V.1157, A:I.1296 Hydrogen bonds: A:L.1298 Salt bridges: A:K.988, A:R.1295 P5S.17: 12 residues within 4Å: Chain B: C.977, F.981, K.988, F.989, L.1153, V.1157, L.1292, R.1295, I.1296, L.1298, S.1299, Y.1301 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.981, B:F.981, B:F.989, B:V.1157, B:I.1296 Hydrogen bonds: B:L.1298 Salt bridges: B:K.988, B:R.1295 P5S.27: 12 residues within 4Å: Chain C: C.977, F.981, K.988, F.989, L.1153, V.1157, L.1292, R.1295, I.1296, L.1298, S.1299, Y.1301 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:F.981, C:F.981, C:F.989, C:V.1157, C:I.1296 Hydrogen bonds: C:L.1298 Salt bridges: C:K.988, C:R.1295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, X. et al., Structure deformation and curvature sensing of PIEZO1 in lipid membranes. Nature (2022)

Release Date

2022-04-13

Peptides

Piezo-type mechanosensitive ion channel component 1: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

Piezo-type mechanosensitive ion channel component 1

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