SMTL ID : 7wlv.1 (1 other biounit)

Crystal Structure of the Multidrug effulx transporter BpeF from Burkholderia pseudomallei.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-trimer

Ligands

4 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.1: 8 residues within 4Å: Chain A: F.30, L.31 Chain B: V.452, V.456, P.457, F.460, S.880, L.891 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.452, B:V.456, B:P.457, B:F.460 LMT.2: 11 residues within 4Å: Chain A: R.10, F.13, I.20 Chain B: A.446, L.449, A.898, L.899, E.955, R.958, E.959, H.962 13 PLIP interactions: 7 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:A.446, B:L.449, B:A.898, B:L.899, A:F.13, A:F.13, A:I.20 Hydrogen bonds: B:E.955, B:R.958, A:R.10 Salt bridges: B:R.958, A:R.10, A:R.10 LMT.3: 15 residues within 4Å: Chain B: M.29, F.30, I.34, N.301, L.303, A.304, D.307, R.337, I.340, V.343, V.344, L.347, V.380, F.383, I.393 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:V.343, B:V.344, B:L.347, B:V.380, B:F.383, B:I.393 Hydrogen bonds: B:F.30, B:N.301, B:D.307, B:R.337 LMT.4: 14 residues within 4Å: Chain B: R.10, F.13, L.17, I.20 Chain C: M.1, A.446, L.449, V.895, A.898, L.899, E.901, R.958, E.959, H.962 12 PLIP interactions: 7 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:A.446, C:L.449, C:V.895, B:F.13, B:L.17, B:I.20 Hydrogen bonds: C:M.1, C:M.1, C:R.958, B:R.10 Salt bridges: C:R.958, B:R.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kato, T. et al., Crystal structures of multidrug efflux transporters from Burkholderia pseudomallei suggest details of transport mechanism. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-07-19

Peptides

Efflux pump membrane transporter: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Efflux pump membrane transporter

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