SMTL ID : 7wmm.1

alpha-synuclein fibril-F0502B complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

2 x 1KI: 2-bromanyl-4-[(~{E})-2-[6-[2-(2-fluoranylethoxy)ethyl-methyl-amino]-5-methyl-1,3-benzothiazol-2-yl]ethenyl]phenol(Non-covalent)

1KI.1: 14 residues within 4Å: Chain A: Y.39, V.40, G.41, T.44, E.46, K.80, V.82, E.83 Chain B: Y.39, V.82, E.83 Chain E: V.40, G.41, T.44 7 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B, 2 interactions with chain E Hydrophobic interactions: A:Y.39, A:T.44, A:V.82, B:Y.39 Hydrogen bonds: A:K.80, E:G.41, E:G.41 1KI.2: 13 residues within 4Å: Chain C: Y.39, V.40, G.41, T.44, E.46, K.80, V.82, E.83 Chain D: Y.39, V.82, E.83 Chain F: G.41, T.44 6 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D, 1 interactions with chain F Hydrophobic interactions: C:Y.39, C:T.44, C:V.82, D:Y.39 Hydrogen bonds: C:K.80, F:G.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tao, Y.Q. et al., alpha-synuclein fibril-F0502B complex. To Be Published

Release Date

2023-01-18

Peptides

Alpha-synuclein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Alpha-synuclein

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