SMTL ID : 7wmt.1

Crystal structure of small molecule 13 bound to human Nicotinamide N-methyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x 1IV: [(2~{R},4~{S})-4-[2-(aminomethyl)imidazol-1-yl]-2-[1-[(4-chlorophenyl)methyl]-5-methyl-indol-2-yl]pyrrolidin-1-yl]-(1~{H}-pyrrolo[2,3-b]pyridin-5-yl)methanone(Non-covalent)

1IV.1: 24 residues within 4Å: Chain A: T.5, S.6, K.7, Y.10, S.12, G.62, S.63, G.64, D.84, Y.85, C.140, D.141, V.142, T.143, T.162, L.163, C.164, A.167, A.168, P.170, T.174, Y.175, L.179, L.182 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.10, A:Y.85, A:V.142, A:V.142, A:A.167, A:A.168, A:P.170, A:Y.175, A:L.179, A:L.182 Hydrogen bonds: A:Y.85, A:D.141, A:V.142, A:T.162 Water bridges: A:T.66, A:N.89 pi-Stacking: A:Y.10, A:Y.10, A:Y.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, S. et al., Peptide-to-Small Molecule: A Pharmacophore-Guided Small Molecule Lead Generation Strategy from High-Affinity Macrocyclic Peptides. J.Med.Chem. (2022)

Release Date

2022-08-31

Peptides

Nicotinamide N-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nicotinamide N-methyltransferase