SMTL ID : 7wmu.1

Crystal Structure of the second bromodomain of human BRD2 in complex with the inhibitor Y13146

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x JGF: ~{N}-[4-[2,4-bis(fluoranyl)phenoxy]-3-[2-(2-cyclobutyl-1~{H}-imidazol-5-yl)-5-methyl-4-oxidanylidene-furo[3,2-c]pyridin-7-yl]phenyl]ethanesulfonamide(Non-covalent)

JGF.1: 16 residues within 4Å: Chain A: W.51, P.52, F.53, K.55, P.56, V.57, D.58, L.62, L.64, C.106, Y.109, N.110, P.111, H.114, D.115, V.116 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.51, A:W.51, A:P.52, A:L.62, A:L.62, A:L.64, A:Y.109, A:P.111, A:D.115, A:V.116, A:V.116 Hydrogen bonds: A:D.58, A:N.110, A:N.110 pi-Stacking: A:H.114 pi-Cation interactions: A:H.114

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: D.58, A.59, S.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.58, A:A.59, A:S.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Structure-Based Discovery and Optimization of Furo[3,2- c ]pyridin-4(5 H )-one Derivatives as Potent and Second Bromodomain (BD2)-Selective Bromo and Extra Terminal Domain (BET) Inhibitors. J.Med.Chem. (2022)

Release Date

2022-08-10

Peptides

Isoform 4 of Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 4 of Bromodomain-containing protein 2

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