SMTL ID : 7wn9.1

Dictyostelium discoideum Lactate dehydrogenase (DicLDHA)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

11 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: V.55, C.79, A.80, G.81, Y.103, H.300 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.55 Hydrogen bonds: A:A.80, A:G.81, A:Y.103 Salt bridges: A:H.300 ACT.2: 2 residues within 4Å: Chain A: N.213, S.214 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.214 Water bridges: A:Q.215 ACT.3: 4 residues within 4Å: Chain A: S.104, P.105, N.106, E.307 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:P.105 Hydrogen bonds: A:N.106, B:N.144 ACT.4: 5 residues within 4Å: Chain A: D.270, Y.271, I.280, I.281, K.282 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.271, A:K.282 Water bridges: A:H.276 ACT.5: 4 residues within 4Å: Chain A: A.102, G.156, N.157, I.158 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.158 Hydrogen bonds: A:N.157, A:I.158 Water bridges: A:G.156, A:G.159 ACT.6: 3 residues within 4Å: Chain A: N.83, L.212, R.239 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.212 Hydrogen bonds: A:N.83 Salt bridges: A:R.239 ACT.7: 3 residues within 4Å: Chain B: G.156, N.157, I.158 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:I.158 Water bridges: B:G.156, B:N.157, B:N.157, B:G.159, B:H.209 ACT.8: 3 residues within 4Å: Chain B: L.212, N.213, S.214 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:N.213 Hydrogen bonds: B:S.214 ACT.9: 5 residues within 4Å: Chain B: D.270, Y.271, I.280, I.281, K.282 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Y.271, B:K.282 Hydrogen bonds: B:D.270, B:Y.271 Water bridges: B:Y.271, B:K.282, B:K.282 Salt bridges: B:K.282 ACT.10: 5 residues within 4Å: Chain A: N.144 Chain B: S.104, P.105, N.106, E.307 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:N.144, B:S.104, B:N.106 Water bridges: B:N.106, B:N.106 ACT.11: 6 residues within 4Å: Chain B: V.55, C.79, A.80, G.81, Y.103, H.300 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:A.80, B:Y.103 Hydrogen bonds: B:G.81 Salt bridges: B:H.300

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dao, O. et al., Dictyostelium discoideum Lactate dehydrogenase (DicLDHA). To Be Published

Release Date

2022-04-20

Peptides

Putative D-lactate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative D-lactate dehydrogenase