SMTL ID : 7won.1

Cryo-EM structure of SARS-CoV-2 S2P trimer in complex with neutralizing antibody VacW-209 (local refinement)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: F.10, N.11, V.35, S.39 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.39, A:S.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ju, B. et al., Immune escape by SARS-CoV-2 Omicron variant and structural basis of its effective neutralization by a broad neutralizing human antibody VacW-209. Cell Res. (2022)

Release Date

2022-07-13

Peptides

Spike protein S1: A
VacW-209 light chain: B
VacW-209 heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
L

C
H

Spike protein S1

VacW-209 light chain

VacW-209 heavy chain

Related Entries With Identical Sequence