SMTL ID : 7wov.1

The state 5 of Omicron Spike with bispecific antibody FD01

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.328, Q.577, T.578 Ligand excluded by PLIP NAG.2: 4 residues within 4Å: Chain A: Y.704, S.705, N.706 Chain C: Y.793 Ligand excluded by PLIP NAG.3: 4 residues within 4Å: Chain A: T.713, N.714, L.919, Q.923 Ligand excluded by PLIP NAG.4: 3 residues within 4Å: Chain A: N.798, S.800, Q.801 Ligand excluded by PLIP NAG.5: 3 residues within 4Å: Chain A: I.1129, V.1130, N.1131 Ligand excluded by PLIP NAG.6: 3 residues within 4Å: Chain B: N.328, Q.577, L.579 Ligand excluded by PLIP NAG.7: 3 residues within 4Å: Chain A: Y.793 Chain B: S.705, N.706 Ligand excluded by PLIP NAG.8: 2 residues within 4Å: Chain B: N.714, Q.923 Ligand excluded by PLIP NAG.9: 2 residues within 4Å: Chain B: N.798, S.800 Ligand excluded by PLIP NAG.10: 3 residues within 4Å: Chain B: N.1095, H.1098, F.1100 Ligand excluded by PLIP NAG.11: 1 residues within 4Å: Chain B: N.1131 Ligand excluded by PLIP NAG.12: 3 residues within 4Å: Chain C: N.328, Q.577, T.578 Ligand excluded by PLIP NAG.13: 1 residues within 4Å: Chain C: N.613 Ligand excluded by PLIP NAG.14: 3 residues within 4Å: Chain B: Y.793 Chain C: N.706, N.707 Ligand excluded by PLIP NAG.15: 4 residues within 4Å: Chain C: N.714, L.919, Q.923, Q.1068 Ligand excluded by PLIP NAG.16: 2 residues within 4Å: Chain C: N.798, S.800 Ligand excluded by PLIP NAG.17: 3 residues within 4Å: Chain C: N.1095, T.1097, F.1100 Ligand excluded by PLIP NAG.18: 2 residues within 4Å: Chain C: V.1130, N.1131 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Combating the SARS-CoV-2 Omicron (BA.1) and BA.2 with potent bispecific antibodies engineered from non-Omicron neutralizing antibodies. Cell Discov (2022)

Release Date

2022-11-30

Peptides

Spike glycoprotein: ABC
16L9 Fv: DFH
GW01 Fv: EGI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

F
F

H
H

E
E

G
G

I
I

Spike glycoprotein

16L9 Fv

GW01 Fv

Related Entries With Identical Sequence