SMTL ID : 7wp5.1

Cryo-EM structure of SARS-CoV-2 Omicron S6P trimer in complex with neutralizing antibody VacW-209 (local refinement)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain C: D.7, F.10, N.11, V.35, L.39 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:V.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ju, B. et al., Immune escape by SARS-CoV-2 Omicron variant and structural basis of its effective neutralization by a broad neutralizing human antibody VacW-209. Cell Res. (2022)

Release Date

2022-07-13

Peptides

VacW-209 light chain: A
VacW-209 heavy chain: B
Spikeprotein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
F

VacW-209 light chain

VacW-209 heavy chain

Spikeprotein S1

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