SMTL ID : 7wp6.1

Cryo-EM structure of SARS-CoV-2 recombinant spike protein STFK in complex with three neutralizing antibodies

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain D: F.6, F.10, N.11, V.35 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain G: Q.1, V.3, N.26, S.27 4 PLIP interactions: 4 interactions with chain G Hydrophobic interactions: G:Q.1, G:V.3 Hydrogen bonds: G:N.26, G:S.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Lineage-mosaic and mutation-patched spike proteins for broad-spectrum COVID-19 vaccine. Cell Host Microbe (2022)

Release Date

2023-03-01

Peptides

36H6 heavy chain: A
83H7 light chain: B
83H7 heavy chain: C
Spike protein S1: D
85F7 heavy chain: E
36H6 light chain: F
85F7 light chain: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

D
F

E
H

F
I

G
L

36H6 heavy chain

83H7 light chain

83H7 heavy chain

Spike protein S1

85F7 heavy chain

36H6 light chain

85F7 light chain

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