SMTL ID : 7wp8.1

Cryo-EM structure of SARS-CoV-2 recombinant spike protein STFK1628x in complex with three neutralizing antibodies

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain D: F.3, G.4, N.8, V.32 Chain E: S.32, Y.33 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:S.32, E:S.32

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain G: Q.1, V.3, N.26, S.27 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Lineage-mosaic and mutation-patched spike proteins for broad-spectrum COVID-19 vaccine. Cell Host Microbe (2022)

Release Date

2023-03-08

Peptides

83H7 light chain: A
83H7 heavy chain: B
2B4 heavy chain: C
Spike glycoprotein: D
2B4 light chain: E
85F7 heavy chain: F
85F7 light chain: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

D
F

E
G

F
H

G
L

83H7 light chain

83H7 heavy chain

2B4 heavy chain

Spike glycoprotein

2B4 light chain

85F7 heavy chain

85F7 light chain

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