SMTL ID : 7wq8.1

Crystal structure of SARS-CoV-2 main protease in complex with Z-DEVD-FMK

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x P6S- FL6- GME- VAL- FL6- CF0: Z-DEVD-FMK(Non-covalent)

P6S-FL6-GME-VAL-FL6-CF0.1: 16 residues within 4Å: Chain A: T.25, T.26, T.27, L.28, H.42, M.50, L.142, C.146, M.166, E.167, P.169, R.189, Q.190, T.191, A.192, Q.193 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.142, A:M.166, A:P.169, A:A.192 Hydrogen bonds: A:E.167, A:E.167 P6S-FL6-GME-VAL-FL6-CF0.2: 16 residues within 4Å: Chain B: T.25, T.26, T.27, L.28, H.42, M.50, L.142, C.146, M.166, E.167, P.169, R.189, Q.190, T.191, A.192, Q.193 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.142, B:M.166, B:P.169, B:A.192 Hydrogen bonds: B:E.167, B:E.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y.C. et al., Crystal structure of SARS-CoV-2 main protease in complex with Z-DEVD-FMK. To Be Published

Release Date

2023-08-02

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase

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