SMTL ID : 7wq9.1

Crystal structure of SARS-CoV-2 main protease in complex with Z-IETD-FMK

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x P6S- ILE- GME- THR- FL6- CF0: Z-IETD-FMK(Non-covalent)

P6S-ILE-GME-THR-FL6-CF0.1: 17 residues within 4Å: Chain A: T.26, T.27, H.42, M.50, L.142, N.143, G.144, S.145, C.146, M.166, E.167, P.169, R.189, Q.190, T.191, A.192, Q.193 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.42, A:G.144, A:S.145, A:C.146, A:E.167, A:E.167, A:Q.190 P6S-ILE-GME-THR-FL6-CF0.2: 17 residues within 4Å: Chain B: T.26, T.27, H.42, M.50, L.142, N.143, G.144, S.145, C.146, M.166, E.167, P.169, R.189, Q.190, T.191, A.192, Q.193 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:H.42, B:G.144, B:S.145, B:C.146, B:E.167, B:E.167, B:Q.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y.C. et al., Crystal structure of SARS-CoV-2 main protease in complex with Z-IETD-FMK. To Be Published

Release Date

2023-08-02

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase

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