SMTL ID : 7wqa.1

SARS-CoV-2 main protease in complex with Z-VAD-FMK

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x PHQ- VAL- ALA- FL6- CF0: Z-VAD(OMe)-FMK(Non-covalent)

PHQ-VAL-ALA-FL6-CF0.1: 11 residues within 4Å: Chain A: H.42, M.50, C.146, H.165, M.166, E.167, P.169, R.189, Q.190, T.191, A.192 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:E.167, A:P.169, A:Q.190 Hydrogen bonds: A:E.167, A:E.167, A:E.167 PHQ-VAL-ALA-FL6-CF0.2: 11 residues within 4Å: Chain B: H.42, M.50, C.146, H.165, M.166, E.167, P.169, R.189, Q.190, T.191, A.192 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:E.167, B:P.169, B:Q.190 Hydrogen bonds: B:E.167, B:E.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y.C. et al., SARS-CoV-2 main protease in complex with Z-VAD-FMK. To Be Published

Release Date

2023-03-22

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase

Related Entries With Identical Sequence