SMTL ID : 7wqk.1

wild-type SARS-CoV-2 main protease in complex with MG-132

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: P.40, R.41, H.42, C.86, H.165, D.188 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.42, A:D.188 MG.3: 6 residues within 4Å: Chain B: P.40, R.41, H.42, C.86, H.165, D.188 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.42, B:D.188

2 x ALD: N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2S)-1-hydroxy-4-methylpentan-2-yl]-L-leucinamide(Covalent)

ALD.2: 13 residues within 4Å: Chain A: H.42, M.50, N.143, C.146, H.164, H.165, M.166, E.167, D.188, R.189, Q.190, T.191, A.192 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:E.167, A:Q.190 Hydrogen bonds: A:H.165, A:E.167, A:E.167, A:Q.190 ALD.4: 13 residues within 4Å: Chain B: H.42, M.50, N.143, C.146, H.164, H.165, M.166, E.167, D.188, R.189, Q.190, T.191, A.192 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:E.167, B:Q.190 Hydrogen bonds: B:H.165, B:E.167, B:E.167, B:Q.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y.C. et al., wild-type SARS-CoV-2 main protease in complex with MG-132. To Be Published

Release Date

2023-08-02

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase

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