SMTL ID : 7wqy.1

Crystal structure of grass carp ARF1-GDP complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: D.26, A.27, A.28, G.29, K.30, T.31, T.32, N.126, K.127, D.129, L.130, C.159, A.160, T.161 Chain B: I.49, G.50, N.52 24 PLIP interactions: 22 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:A.27, A:A.28, A:G.29, A:K.30, A:T.31, A:T.32, A:T.32, A:N.126, A:K.127, A:K.127, A:A.160, A:T.161, A:T.161, B:G.50, B:N.52 Water bridges: A:K.30, A:T.31, A:T.32, A:T.32, A:D.67, A:D.129 Salt bridges: A:K.30, A:D.129 pi-Cation interactions: A:K.127 GDP.2: 17 residues within 4Å: Chain A: I.49, G.50, N.52 Chain B: D.26, A.27, A.28, G.29, K.30, T.31, T.32, N.126, K.127, D.129, L.130, C.159, A.160, T.161 23 PLIP interactions: 2 interactions with chain A, 21 interactions with chain B Hydrogen bonds: A:G.50, A:N.52, B:A.27, B:A.28, B:G.29, B:K.30, B:T.31, B:T.31, B:T.31, B:T.32, B:T.32, B:N.126, B:K.127, B:K.127, B:A.160, B:T.161 Water bridges: B:K.30, B:K.30, B:T.32, B:T.32, B:D.67 Salt bridges: B:K.30, B:D.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ouyang, S. et al., Crystal structure of grass carp ARF1. To Be Published

Release Date

2023-03-01

Peptides

ARF1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ARF1