SMTL ID : 7wr8.1

Local CryoEM structure of the SARS-CoV-2 S6P(B.1.1.529) in complex with BD55-3152 Fab

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 12 residues within 4Å: Chain A: F.5, D.6, F.9, N.10, V.34 Chain B: Y.52, R.75, T.78, Y.126, W.128 Chain C: T.113, T.114 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:Y.52, B:Y.52, B:T.78, B:R.75, B:R.75, B:R.75 Hydrophobic interactions: C:T.113, C:T.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, Y. et al., BA.2.12.1, BA.4 and BA.5 escape antibodies elicited by Omicron infection. Nature (2022)

Release Date

2022-06-22

Peptides

Spike protein S1: A
BD55-3152H: B
BD55-3152L: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
A

C
B

Spike protein S1

BD55-3152H

BD55-3152L

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