SMTL ID : 7wr9.1

Local CryoEM structure of the SARS-CoV S2P in complex with BD55-3152 Fab

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 11 residues within 4Å: Chain A: Y.52, R.75, T.78, Y.126, W.128 Chain B: T.113, T.114 Chain C: F.3, G.4, N.8, V.32 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.126 Hydrogen bonds: A:R.75

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain C: S.31, V.32, N.35 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:V.32 Hydrogen bonds: C:S.31, C:N.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Du, S. et al., Local CryoEM structure of the SARS-CoV S2P in complex with BD55-3152 Fab. To Be Published

Release Date

2023-02-01

Peptides

BD55-3152H: A
BD55-3152L: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
F

BD55-3152H

BD55-3152L

Spike protein S1

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