- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)
- 2 x F3S: FE3-S4 CLUSTER(Covalent)
F3S.2: 13 residues within 4Å:- Chain A: R.205, C.216, C.217, G.218, N.219, N.220, N.221, C.222, C.226, I.228, A.230, G.342, S.343
3 PLIP interactions:3 interactions with chain A,- Metal complexes: A:C.216, A:C.222, A:C.226
F3S.7: 13 residues within 4Å:- Chain D: R.205, C.216, C.217, G.218, N.219, N.220, N.221, C.222, C.226, I.228, A.230, G.342, S.343
3 PLIP interactions:3 interactions with chain D,- Metal complexes: D:C.216, D:C.222, D:C.226
- 6 x HEC: HEME C(Covalent)
HEC.3: 24 residues within 4Å:- Chain A: P.214, I.228
- Chain C: A.261, R.262, V.342, C.343, C.346, H.347, Y.358, Y.359, P.360, N.365, T.367, T.368, L.376, S.379, I.380, V.384, R.386, I.393, M.395, P.396, F.398, I.415
19 PLIP interactions:17 interactions with chain C, 2 interactions with chain A,- Hydrophobic interactions: C:V.342, C:Y.359, C:P.360, C:T.368, C:L.376, C:I.380, C:V.384, C:M.395, C:F.398, C:F.398, C:F.398, C:I.415, A:P.214, A:I.228
- Hydrogen bonds: C:R.262, C:N.365, C:T.367
- Salt bridges: C:R.262, C:R.386
HEC.4: 22 residues within 4Å:- Chain C: H.200, C.201, C.204, H.205, I.225, R.229, A.230, P.231, I.233, I.241, W.244, Y.252, L.253, A.264, P.266, M.267, L.275, I.286, T.366, T.367, Q.370, D.375
14 PLIP interactions:14 interactions with chain C,- Hydrophobic interactions: C:I.225, C:I.233, C:I.241, C:I.241, C:W.244, C:Y.252, C:L.253, C:P.266, C:P.266, C:L.275, C:I.286
- Hydrogen bonds: C:T.366, C:Q.370
- Metal complexes: C:H.205
HEC.5: 20 residues within 4Å:- Chain C: A.50, D.51, C.52, C.55, H.56, I.78, S.80, T.81, N.82, I.83, I.91, Y.94, F.99, A.102, L.103, L.114, Y.115, A.117, M.118, Y.123
12 PLIP interactions:12 interactions with chain C,- Hydrophobic interactions: C:A.50, C:I.83, C:Y.94, C:F.99, C:A.102, C:L.103, C:L.114, C:Y.115, C:Y.123
- Hydrogen bonds: C:R.108
- Salt bridges: C:R.161
- Metal complexes: C:H.56
HEC.8: 23 residues within 4Å:- Chain D: P.214, I.228
- Chain F: A.261, R.262, V.342, C.343, C.346, H.347, Y.358, Y.359, P.360, N.365, T.367, T.368, S.379, I.380, V.384, R.386, I.393, M.395, P.396, F.398, I.415
18 PLIP interactions:16 interactions with chain F, 2 interactions with chain D,- Hydrophobic interactions: F:V.342, F:Y.359, F:P.360, F:T.368, F:I.380, F:V.384, F:M.395, F:F.398, F:F.398, F:F.398, F:I.415, D:P.214, D:I.228
- Hydrogen bonds: F:R.262, F:N.365, F:T.367
- Salt bridges: F:R.262, F:R.386
HEC.9: 23 residues within 4Å:- Chain F: H.200, C.201, C.204, H.205, I.225, W.228, R.229, A.230, P.231, I.233, I.241, W.244, Y.252, L.253, A.264, P.266, M.267, L.275, I.286, T.366, T.367, Q.370, D.375
14 PLIP interactions:14 interactions with chain F,- Hydrophobic interactions: F:I.225, F:I.233, F:I.241, F:I.241, F:W.244, F:Y.252, F:L.253, F:P.266, F:P.266, F:L.275, F:I.286
- Hydrogen bonds: F:T.366, F:Q.370
- Metal complexes: F:H.205
HEC.10: 20 residues within 4Å:- Chain F: A.50, D.51, C.52, C.55, H.56, I.78, S.80, T.81, N.82, I.83, I.91, Y.94, F.99, A.102, L.103, L.114, Y.115, A.117, M.118, Y.123
11 PLIP interactions:11 interactions with chain F,- Hydrophobic interactions: F:A.50, F:I.83, F:Y.94, F:F.99, F:A.102, F:L.103, F:L.114, F:Y.115, F:Y.123
- Hydrogen bonds: F:R.108
- Metal complexes: F:H.56
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Suzuki, Y. et al., Essential Insight of Direct Electron Transfer-Type Bioelectrocatalysis by Membrane-Bound d-Fructose Dehydrogenase with Structural Bioelectrochemistry. Acs Catalysis (2023)
- Release Date
- 2023-02-08
- Peptides
- Fructose dehydrogenase large subunit: AD
Fructose dehydrogenase small subunit: BE
Fructose dehydrogenase cytochrome subunit: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)
- 2 x F3S: FE3-S4 CLUSTER(Covalent)
- 6 x HEC: HEME C(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Suzuki, Y. et al., Essential Insight of Direct Electron Transfer-Type Bioelectrocatalysis by Membrane-Bound d-Fructose Dehydrogenase with Structural Bioelectrochemistry. Acs Catalysis (2023)
- Release Date
- 2023-02-08
- Peptides
- Fructose dehydrogenase large subunit: AD
Fructose dehydrogenase small subunit: BE
Fructose dehydrogenase cytochrome subunit: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F