SMTL ID : 7wsr.1

Cryo-EM structure of the barley Yellow stripe 1 transporter

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

4 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.1: 7 residues within 4Å: Chain A: K.261, A.262, Q.265, F.267, G.299, P.303, I.616 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.262, A:F.267, A:P.303, A:I.616 Hydrogen bonds: A:Q.265 Salt bridges: A:K.261, A:K.261 Y01.2: 9 residues within 4Å: Chain A: T.257, F.258, G.259, L.260, P.676 Chain B: F.243, Y.244, P.669, I.670 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.243, B:F.243, B:F.243, B:P.669, B:I.670, A:L.260 Hydrogen bonds: B:P.669 Y01.3: 9 residues within 4Å: Chain A: F.243, Y.244, P.669, I.670 Chain B: T.257, F.258, G.259, L.260, P.676 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.243, A:F.243, A:F.243, A:P.669, A:I.670, B:L.260 Hydrogen bonds: A:P.669 Y01.4: 7 residues within 4Å: Chain B: K.261, A.262, Q.265, F.267, G.299, P.303, I.616 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:A.262, B:F.267, B:P.303, B:I.616 Hydrogen bonds: B:Q.265 Salt bridges: B:K.261, B:K.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamagata, A. et al., Uptake mechanism of iron-phytosiderophore from the soil based on the structure of yellow stripe transporter. Nat Commun (2022)

Release Date

2022-11-30

Peptides

Iron-phytosiderophore transporter: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Iron-phytosiderophore transporter

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