SMTL ID : 7wt2.1

human glyoxalase I in complex with TLSC702

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.127, E.173 Chain B: Q.34, E.100 Ligands: 5ZO.2 4 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:E.100, A:H.127, A:E.173, H2O.1 ZN.3: 5 residues within 4Å: Chain A: Q.34, E.100 Chain B: H.127, E.173 Ligands: 5ZO.4 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:H.127, B:E.173, A:E.100, H2O.4

2 x 5ZO: (~{E})-3-(1,3-benzothiazol-2-yl)-4-(4-methoxyphenyl)but-3-enoic acid(Non-covalent)

5ZO.2: 16 residues within 4Å: Chain A: H.127, K.151, M.158, L.161, F.163, W.171, E.173, M.180, M.184 Chain B: C.61, F.63, L.70, F.72, L.93, E.100 Ligands: ZN.1 9 PLIP interactions: 4 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:F.63, B:L.70, B:F.72, B:L.93, A:K.151, A:L.161, A:F.163, A:F.163 Salt bridges: A:H.127 5ZO.4: 16 residues within 4Å: Chain A: C.61, F.63, L.70, F.72, L.93, E.100 Chain B: H.127, K.151, M.158, L.161, F.163, W.171, E.173, M.180, M.184 Ligands: ZN.3 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:F.63, A:L.70, A:F.72, A:L.93, B:K.151, B:L.161, B:F.163 Salt bridges: B:H.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Usami, M. et al., Crystal structures of human glyoxalase I and its complex with TLSC702 reveal inhibitor binding mode and substrate preference. Febs Lett. (2022)

Release Date

2022-04-13

Peptides

Lactoylglutathione lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lactoylglutathione lyase