SMTL ID : 7wu7.1

Prefoldin-tubulin-TRiC complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-2-2-2-2-2-2-2-2-mer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain L: L.38, G.39, P.40, D.59, G.60, D.90, G.91, T.92, T.93, T.154, T.158, K.159, D.393, G.410, A.411, L.481, V.494, D.496 10 PLIP interactions: 10 interactions with chain L Hydrogen bonds: L:G.39, L:D.59, L:G.60, L:T.93, L:S.94, L:R.157, L:A.411, L:D.496 Salt bridges: L:K.159, L:K.159 ADP.2: 20 residues within 4Å: Chain N: Y.47, G.48, P.49, G.98, D.99, G.100, T.101, N.102, F.103, T.166, M.169, S.170, K.171, D.394, G.411, G.412, L.452, I.482, I.497, D.499 15 PLIP interactions: 15 interactions with chain N Hydrogen bonds: N:G.48, N:G.98, N:D.99, N:G.100, N:T.101, N:N.102, N:N.102, N:F.103, N:S.170, N:G.412, N:D.499, N:D.499, N:K.504 Salt bridges: N:K.171, N:K.171 ADP.3: 20 residues within 4Å: Chain T: G.39, P.40, G.60, G.89, D.90, G.91, T.92, T.93, S.94, T.154, T.158, K.159, G.410, A.411, G.412, I.447, L.451, L.481, V.494, D.496 11 PLIP interactions: 11 interactions with chain T Hydrogen bonds: T:G.39, T:G.60, T:T.93, T:T.93, T:S.94, T:T.154, T:T.158, T:A.411, T:G.412, T:D.496 Salt bridges: T:K.159 ADP.4: 19 residues within 4Å: Chain V: Y.47, G.48, P.49, D.99, G.100, T.101, N.102, F.103, T.166, M.169, S.170, K.171, D.394, G.412, E.416, L.452, I.482, I.497, D.499 9 PLIP interactions: 9 interactions with chain V Hydrogen bonds: V:Y.47, V:G.48, V:G.100, V:T.101, V:N.102, V:F.103, V:S.170, V:E.416 Salt bridges: V:K.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gestaut, D. et al., Structural visualization of the tubulin folding pathway directed by human chaperonin TRiC/CCT. Cell (2022)

Release Date

2022-12-21

Peptides

Prefoldin subunit 1: A
Prefoldin subunit 2: B
Prefoldin subunit 3: C
Prefoldin subunit 4: D
Prefoldin subunit 5: E
Prefoldin subunit 6: F
T-complex protein 1 subunit alpha: GO
T-complex protein 1 subunit beta: HP
T-complex protein 1 subunit gamma: IQ
T-complex protein 1 subunit delta: JR
T-complex protein 1 subunit epsilon: KS
T-complex protein 1 subunit zeta: LT
T-complex protein 1 subunit eta: MU
T-complex protein 1 subunit theta: NV

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

E
5

F
6

G
A

O
I

H
B

P
J

I
C

Q
K

J
D

R
L

K
E

S
M

L
F

T
N

M
G

U
O

N
H

V
P

Prefoldin subunit 1

Prefoldin subunit 2

Prefoldin subunit 3

Prefoldin subunit 4

Prefoldin subunit 5

Prefoldin subunit 6

T-complex protein 1 subunit alpha

T-complex protein 1 subunit beta

T-complex protein 1 subunit gamma

T-complex protein 1 subunit delta

T-complex protein 1 subunit epsilon

T-complex protein 1 subunit zeta

T-complex protein 1 subunit eta

T-complex protein 1 subunit theta

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