SMTL ID : 7wv3.1

Toll-like receptor3 linear cluster

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

8 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: S.15, N.34, T.36, D.58 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 7 residues within 4Å: Chain A: E.340, S.364, N.390, T.392, V.412, D.414, Y.439 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain B: S.15, N.34, T.36, D.58 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 7 residues within 4Å: Chain B: E.340, S.364, N.390, T.392, V.412, D.414, Y.439 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain C: S.15, N.34, T.36, D.58 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 7 residues within 4Å: Chain C: E.340, S.364, N.390, T.392, V.412, D.414, Y.439 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 4 residues within 4Å: Chain D: S.15, N.34, T.36, D.58 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 7 residues within 4Å: Chain D: E.340, S.364, N.390, T.392, V.412, D.414, Y.439 No protein-ligand interaction detected (PLIP)

28 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.9: 1 residues within 4Å: Chain A: N.173 Ligand excluded by PLIP NAG.10: 4 residues within 4Å: Chain A: L.220, A.223, N.224, W.250 Ligand excluded by PLIP NAG.11: 3 residues within 4Å: Chain A: K.177, N.229, M.255 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain A: N.242, W.273 Ligand excluded by PLIP NAG.13: 3 residues within 4Å: Chain A: N.268, F.291, H.293 Ligand excluded by PLIP NAG.14: 3 residues within 4Å: Chain A: N.375, E.376, W.406 Ligand excluded by PLIP NAG.15: 4 residues within 4Å: Chain A: P.457, S.458, N.484, K.508 Ligand excluded by PLIP NAG.16: 1 residues within 4Å: Chain B: N.173 Ligand excluded by PLIP NAG.17: 4 residues within 4Å: Chain B: L.220, A.223, N.224, W.250 Ligand excluded by PLIP NAG.18: 3 residues within 4Å: Chain B: K.177, N.229, M.255 Ligand excluded by PLIP NAG.19: 2 residues within 4Å: Chain B: N.242, W.273 Ligand excluded by PLIP NAG.20: 3 residues within 4Å: Chain B: N.268, F.291, H.293 Ligand excluded by PLIP NAG.21: 3 residues within 4Å: Chain B: N.375, E.376, W.406 Ligand excluded by PLIP NAG.22: 4 residues within 4Å: Chain B: P.457, S.458, N.484, K.508 Ligand excluded by PLIP NAG.23: 1 residues within 4Å: Chain C: N.173 Ligand excluded by PLIP NAG.24: 4 residues within 4Å: Chain C: L.220, A.223, N.224, W.250 Ligand excluded by PLIP NAG.25: 3 residues within 4Å: Chain C: K.177, N.229, M.255 Ligand excluded by PLIP NAG.26: 2 residues within 4Å: Chain C: N.242, W.273 Ligand excluded by PLIP NAG.27: 3 residues within 4Å: Chain C: N.268, F.291, H.293 Ligand excluded by PLIP NAG.28: 3 residues within 4Å: Chain C: N.375, E.376, W.406 Ligand excluded by PLIP NAG.29: 4 residues within 4Å: Chain C: P.457, S.458, N.484, K.508 Ligand excluded by PLIP NAG.30: 1 residues within 4Å: Chain D: N.173 Ligand excluded by PLIP NAG.31: 4 residues within 4Å: Chain D: L.220, A.223, N.224, W.250 Ligand excluded by PLIP NAG.32: 3 residues within 4Å: Chain D: K.177, N.229, M.255 Ligand excluded by PLIP NAG.33: 2 residues within 4Å: Chain D: N.242, W.273 Ligand excluded by PLIP NAG.34: 3 residues within 4Å: Chain D: N.268, F.291, H.293 Ligand excluded by PLIP NAG.35: 3 residues within 4Å: Chain D: N.375, E.376, W.406 Ligand excluded by PLIP NAG.36: 4 residues within 4Å: Chain D: P.457, S.458, N.484, K.508 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, C.S. et al., TLR3 forms a highly organized cluster when bound to a poly(I:C) RNA ligand. Nat Commun (2022)

Release Date

2022-11-16

Peptides

Toll-like receptor 3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Toll-like receptor 3