SMTL ID : 7ww0.1

The crystal structure of FinI complex with SAH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain A: G.190, M.203, M.207, H.216, G.242, G.243, A.244, D.268, L.269, V.272, I.292, D.293, F.294, H.295, R.309, R.310, I.311, D.314 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:A.244 Hydrogen bonds: A:A.244, A:L.269, A:D.293, A:F.294, A:R.309, A:R.309 Water bridges: A:T.188, A:T.188, A:G.190, A:T.248, A:R.309, A:R.309 Salt bridges: A:H.216, A:R.309, A:R.310 pi-Stacking: A:F.294, A:F.294 SAH.12: 13 residues within 4Å: Chain B: A.211, G.242, A.244, T.248, D.268, L.269, V.272, I.292, D.293, F.294, H.295, R.309, R.310 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:A.244 Hydrogen bonds: B:G.242, B:A.244, B:T.248, B:D.293, B:F.294 Water bridges: B:R.309 Salt bridges: B:R.309 pi-Stacking: B:F.294

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.71, L.74, H.75 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.71, A:H.75, A:K.77 SO4.3: 4 residues within 4Å: Chain A: H.196, P.197, E.198, R.199 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.198, A:R.199 Salt bridges: A:H.196 SO4.13: 4 residues within 4Å: Chain B: H.196, P.197, E.198, R.199 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.198, B:R.199 Salt bridges: B:H.196 SO4.14: 3 residues within 4Å: Chain B: R.71, L.74, H.75 4 PLIP interactions: 4 interactions with chain B Water bridges: B:H.75 Salt bridges: B:R.71, B:H.75, B:K.77 SO4.17: 6 residues within 4Å: Chain B: Y.151, M.210, R.313, L.355, F.358, L.359 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.151 Water bridges: B:R.313 Salt bridges: B:R.313

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: A.94, T.95, G.98, G.99 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.95 EDO.5: 5 residues within 4Å: Chain A: L.145, D.149, E.150, R.199, N.202 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.71, A:D.149, A:D.149, A:E.150, A:N.202 Water bridges: A:R.199 EDO.6: 3 residues within 4Å: Chain A: T.128, A.129, R.132 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.129, A:R.132, A:R.132 Water bridges: A:T.128, A:R.130 EDO.10: 5 residues within 4Å: Chain A: A.211, P.215, H.216, T.217, K.391 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.216, A:K.391 EDO.11: 5 residues within 4Å: Chain A: Q.47, D.48, W.350 Chain B: T.114, R.130 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.47, A:W.350, B:T.114, B:R.130, B:R.130

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain A: L.140, A.209, M.210, A.211, S.212 Chain B: R.54 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:R.54, A:M.210, A:A.211, A:S.212 GOL.9: 4 residues within 4Å: Chain A: W.143, G.147, Y.151, L.355 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.143, A:W.143, A:G.147, A:Y.151 GOL.15: 4 residues within 4Å: Chain A: L.25 Chain B: S.10, L.11, A.49 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.11 Water bridges: B:S.10, B:S.10, B:S.10, B:D.12

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.8: 4 residues within 4Å: Chain A: M.290, P.299, V.300, Q.301 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.301

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.16: 7 residues within 4Å: Chain B: Y.220, W.224, K.336, T.384, G.385, H.387, V.398 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.384, B:T.384

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, J. et al., The crystal structure of FinI complex with SAH. To Be Published

Release Date

2023-02-15

Peptides

Methyltransf_2 domain-containing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Methyltransf_2 domain-containing protein

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