SMTL ID : 7wy2.2 (1 other biounit)

Structure of the Oxomolybdenum Mesoporphyrin IX-Reconstituted CYP102A1 F87A Mutant Haem Domain with N-Enanthyl-L-Prolyl-L-Phenylalanine in complex with Styrene

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x MI9: Oxomolybdenum Mesoporphyrin IX(Non-covalent)

MI9.1: 24 residues within 4Å: Chain A: K.70, L.76, L.87, A.88, W.97, F.108, F.262, A.265, T.269, T.270, L.273, T.328, A.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, A.407 Ligands: SYN.3 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.87, A:A.88, A:F.108, A:F.262, A:A.265, A:L.273, A:F.394, A:I.402, A:A.407 Water bridges: A:K.70, A:K.70, A:S.333, A:S.333, A:S.333, A:S.333 Salt bridges: A:K.70, A:R.399

1 x D0L: (2S)-2-[[(2S)-1-heptylpyrrolidin-2-yl]carbonylamino]-3-phenyl-propanoic acid(Non-covalent)

D0L.2: 14 residues within 4Å: Chain A: L.21, P.26, L.30, R.48, Y.52, S.73, Q.74, A.75, L.189, A.329, A.331, M.355, L.438 Ligands: SYN.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.21, A:P.26, A:L.30, A:Q.74, A:L.189, A:A.329, A:A.331, A:L.438 Hydrogen bonds: A:Y.52, A:Q.74, A:A.75 pi-Cation interactions: A:R.48

1 x SYN: ethenylbenzene(Non-covalent)

SYN.3: 7 residues within 4Å: Chain A: L.76, A.88, T.261, I.264, L.438 Ligands: MI9.1, D0L.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.76, A:A.88, A:T.261, A:I.264, A:L.438

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: T.23, D.24, P.26, M.186, Q.190, E.436, T.437 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.23 Water bridges: A:D.183, A:T.437 GOL.5: 6 residues within 4Å: Chain A: K.392, F.394, G.395, N.396, G.397, Q.404 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.392, A:K.392, A:G.397, A:Q.404, A:Q.404 Water bridges: A:H.389, A:N.396 GOL.6: 2 residues within 4Å: Chain A: E.132, R.133 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.132, A:R.133 Water bridges: A:K.453 GOL.7: 8 residues within 4Å: Chain A: W.131, E.132, L.134, N.135, A.136, A.449, K.450, S.451 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.134, A:L.134, A:N.135, A:S.451 Water bridges: A:S.451 GOL.8: 5 residues within 4Å: Chain A: D.69, T.92, H.93, Y.335, K.337 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.69, A:Y.335, A:K.337 Water bridges: A:K.337 GOL.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 2 residues within 4Å: Chain A: T.11, G.13 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, K. et al., A Compound I Mimic Reveals the Transient Active Species of a Cytochrome P450 Enzyme: Insight into the Stereoselectivity of P450-Catalysed Oxidations. Angew.Chem.Int.Ed.Engl. (2023)

Release Date

2023-01-04

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bifunctional cytochrome P450/NADPH--P450 reductase

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