SMTL ID : 7wy3.1 (1 other biounit)

Structure of the Oxomolybdenum Mesoporphyrin IX-Reconstituted CYP102A1 F87V Mutant Haem Domain with N-(5-Cyclohexyl)valeroyl-L-Phenylalanine in complex with Styrene

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x MI9: Oxomolybdenum Mesoporphyrin IX(Non-covalent)

MI9.1: 24 residues within 4Å: Chain A: K.70, L.76, L.87, V.88, W.97, F.108, F.262, A.265, T.269, T.270, L.273, T.328, A.329, F.332, P.393, F.394, G.395, R.399, A.400, C.401, I.402, G.403, A.407 Ligands: SYN.3 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:V.88, A:F.108, A:F.262, A:A.265, A:L.273, A:T.328, A:F.394, A:I.402, A:A.407 Water bridges: A:K.70, A:K.70, A:S.333, A:S.333, A:S.333 Salt bridges: A:K.70, A:R.399

1 x GKX: (2~{S})-2-(5-cyclohexylpentanoylamino)-3-phenyl-propanoic acid(Non-covalent)

GKX.2: 13 residues within 4Å: Chain A: L.21, V.27, R.48, Y.52, S.73, Q.74, A.75, L.189, P.330, A.331, M.355, L.438 Ligands: SYN.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.21, A:V.27, A:Q.74, A:A.75, A:P.330, A:L.438 Hydrogen bonds: A:Y.52, A:Q.74, A:A.75

1 x SYN: ethenylbenzene(Non-covalent)

SYN.3: 7 residues within 4Å: Chain A: L.76, V.88, T.261, I.264, L.438 Ligands: MI9.1, GKX.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.76, A:V.88, A:V.88, A:I.264, A:L.438

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: D.69, T.92, H.93, Y.335, K.337 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.69, A:Y.335, A:K.337 GOL.5: 2 residues within 4Å: Chain A: E.132, R.133 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.133 GOL.6: 7 residues within 4Å: Chain A: W.131, L.134, N.135, A.136, A.449, K.450, S.451 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.135, A:S.451 GOL.7: 7 residues within 4Å: Chain A: T.147, R.148, L.151, S.165, P.171, I.175, H.267 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.148 GOL.8: 6 residues within 4Å: Chain A: L.105, F.108, C.401, I.402, Q.405 Ligands: GOL.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.404, A:Q.405 Water bridges: A:Q.405 GOL.9: 5 residues within 4Å: Chain A: V.309, K.310, L.312, G.316, T.412 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.310, A:K.310 Water bridges: A:G.316 GOL.10: 7 residues within 4Å: Chain A: H.101, G.397, Q.398, A.400, C.401, I.402 Ligands: GOL.8 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 3 residues within 4Å: Chain A: T.11, F.12, G.13 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, K. et al., A Compound I Mimic Reveals the Transient Active Species of a Cytochrome P450 Enzyme: Insight into the Stereoselectivity of P450-Catalysed Oxidations. Angew.Chem.Int.Ed.Engl. (2023)

Release Date

2023-01-04

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bifunctional cytochrome P450/NADPH--P450 reductase

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