SMTL ID : 7wyf.1

Plasmodium falciparum dihydroorotate dehydrogenase (DHODH) in complex with its inhibitor 50

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 24 residues within 4Å: Chain A: A.86, A.87, G.88, K.91, G.110, T.111, I.125, I.134, N.136, C.138, S.173, K.291, S.319, N.320, S.339, G.340, L.343, S.367, G.368, G.369, I.370, Y.390, S.391 Ligands: ORO.2 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:I.125, A:I.134, A:N.136, A:Y.390 Hydrogen bonds: A:A.87, A:K.91, A:T.111, A:T.111, A:T.111, A:S.173, A:K.291, A:K.291, A:N.320, A:S.339, A:G.340, A:S.367, A:G.368, A:G.369, A:I.370, A:Y.390, A:S.391, A:S.391, A:S.391 pi-Stacking: A:Y.390

1 x ORO: OROTIC ACID(Non-covalent)

ORO.2: 11 residues within 4Å: Chain A: K.91, N.136, C.138, G.139, F.140, N.204, S.206, P.208, N.320, T.321 Ligands: FMN.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.140 Hydrogen bonds: A:N.136, A:N.136, A:C.138, A:G.139, A:F.140, A:N.320, A:N.320, A:T.321 Salt bridges: A:K.91

1 x 7NE: ethyl 2-(naphthalen-2-ylamino)-4-oxidanylidene-furan-3-carboxylate(Non-covalent)

7NE.3: 13 residues within 4Å: Chain A: L.34, G.43, E.44, C.46, H.47, F.50, L.59, F.89, L.102, I.125, R.127, V.394, M.398 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:H.47, A:L.59, A:F.89, A:L.102, A:I.125 Hydrogen bonds: A:H.47, A:H.47, A:R.127 Salt bridges: A:H.47, A:R.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, L. et al., Plasmodium falciparum dihydroorotate dehydrogenase (DHODH) in complex with its inhibitor 50. To Be Published

Release Date

2023-02-22

Peptides

Dihydroorotate dehydrogenase (quinone), mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydroorotate dehydrogenase (quinone), mitochondrial

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