SMTL ID : 7wyg.1 (1 other biounit)

Crystal structure of P450BSbeta-L78I/Q85H/G290I variant in complex with palmitic acid.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 31 residues within 4Å: Chain A: Y.60, R.67, I.85, H.86, H.93, K.97, F.100, M.104, N.240, V.241, P.244, I.245, A.247, I.248, F.251, F.290, I.291, L.294, L.319, P.352, Q.353, G.354, G.361, H.362, R.363, C.364, P.365, G.366, I.369, T.370 Ligands: PAM.2 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:I.85, A:F.100, A:P.244, A:I.248, A:I.248, A:F.251, A:F.251, A:F.290, A:F.290, A:I.291, A:L.294, A:L.319, A:Q.353, A:P.365, A:I.369 Salt bridges: A:R.67, A:H.93, A:K.97, A:H.362 Metal complexes: A:C.364

1 x PAM: PALMITOLEIC ACID(Non-covalent)

PAM.2: 12 residues within 4Å: Chain A: A.70, P.72, I.79, F.80, V.171, R.243, P.244, I.291, F.293, G.295, L.316 Ligands: HEM.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.72, A:F.80, A:P.244, A:I.291, A:L.316 Water bridges: A:R.243 Salt bridges: A:R.243

8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 6 residues within 4Å: Chain A: L.347, G.356, H.357, A.358, E.359, R.363 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.358, A:E.359 PEG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PEG.5: 4 residues within 4Å: Chain A: M.98, L.99, S.102, E.217 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.99 PEG.6: 4 residues within 4Å: Chain A: R.111, L.115, Y.149, W.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.111, A:Y.149 PEG.7: 4 residues within 4Å: Chain A: D.172, R.400, L.404, E.406 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.406 PEG.8: 2 residues within 4Å: Chain A: H.216, F.220 No protein-ligand interaction detected (PLIP) PEG.9: 3 residues within 4Å: Chain A: L.37, F.38, Q.39 No protein-ligand interaction detected (PLIP) PEG.10: 5 residues within 4Å: Chain A: P.326, R.327, L.328, W.329, D.330 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.11: 2 residues within 4Å: Chain A: H.95, T.222 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.222, A:T.222, H2O.4, H2O.7, H2O.9, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, K. et al., Biocatalytic Enantioselective beta-Hydroxylation of Unactivated C-H Bonds in Aliphatic Carboxylic Acids. Angew.Chem.Int.Ed.Engl. (2022)

Release Date

2022-12-21

Peptides

Cytochrome P450 152A1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 152A1

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