SMTL ID : 7wyi.1

Native Photosystem I of Chlamydomonas reinhardtii

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.90 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x CL0: CHLOROPHYLL A ISOMER(Non-covalent)

CL0.1: 8 residues within 4Å: Chain A: S.654, H.676, W.679, T.738, T.739 Chain B: W.626 Ligands: CLA.42, CLA.47 3 PLIP interactions: 3 interactions with chain A, Hydrophobic interactions: A:S.654, A:W.679, A:T.738

155 x CLA: CHLOROPHYLL A(Non-covalent)(Non-functional Binders)

CLA.2: 7 residues within 4Å: Chain A: A.680, F.681, L.683, M.684, F.687 Chain B: L.579 Ligands: CLA.42 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A, Hydrophobic interactions: B:L.579, A:A.680, A:L.683, A:M.684, A:F.687 CLA.3: 6 residues within 4Å: Chain A: A.56, A.76 Ligands: CLA.4, CLA.5, CLA.9, CLA.88 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:A.56 CLA.4: 9 residues within 4Å: Chain A: H.57, A.76, Q.80, W.349, Q.352, L.353 Ligands: CLA.3, CLA.5, CLA.28 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:A.76, A:Q.80, A:W.349, A:Q.352, A:L.353 CLA.5: 3 residues within 4Å: Ligands: CLA.3, CLA.4, CLA.28 0 PLIP interactions: CLA.6: 4 residues within 4Å: Chain A: W.87, G.90 Ligands: CLA.7, CLA.8 0 PLIP interactions: CLA.7: 7 residues within 4Å: Chain A: Q.139, I.140, T.141, S.142 Ligands: CLA.6, CLA.8, CLA.26 2 PLIP interactions: 2 interactions with chain A, Hydrogen bonds: A:T.141, A:S.142 CLA.8: 6 residues within 4Å: Chain A: V.117, V.118, W.119 Ligands: CLA.6, CLA.7, CLA.74 1 PLIP interactions: 1 interactions with chain A, Hydrogen bonds: A:W.119 CLA.9: 9 residues within 4Å: Chain A: E.23, T.24, S.25, K.72, S.75, F.174, G.177, W.178 Ligands: CLA.3 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:S.75, A:W.178 CLA.10: 7 residues within 4Å: Chain A: K.14, N.193, S.196, T.314 Ligands: CLA.11, CLA.18, CLA.100 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:T.314 CLA.11: 6 residues within 4Å: Chain A: H.77, N.193, M.197, H.200 Ligands: CLA.10, CLA.100 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:M.197 CLA.12: 6 residues within 4Å: Chain A: G.152, A.212, H.216, P.240 Ligands: CLA.13, CLA.14 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:A.212 CLA.13: 6 residues within 4Å: Chain A: L.211, A.212, A.214, G.215, G.260 Ligands: CLA.12 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:A.214 CLA.14: 2 residues within 4Å: Chain A: H.241 Ligands: CLA.12 0 PLIP interactions: CLA.15: 11 residues within 4Å: Chain A: W.269, S.270, Y.272, S.273, L.276, T.277, F.278, A.300, N.501 Ligands: CLA.16, CLA.34 4 PLIP interactions: 4 interactions with chain A, Hydrophobic interactions: A:W.269, A:S.273, A:L.276, A:A.300 CLA.16: 8 residues within 4Å: Chain A: D.293, T.294, H.297, A.300, H.370 Ligands: CLA.15, CLA.17, CLA.25 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:H.297, A:A.300 CLA.17: 6 residues within 4Å: Chain A: A.150, G.209, S.210, P.376 Ligands: CLA.16, CLA.27 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:P.376 CLA.18: 8 residues within 4Å: Chain A: N.199, G.203, G.204, H.310, M.311, Y.312, T.314 Ligands: CLA.10 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:N.199 CLA.19: 5 residues within 4Å: Chain A: A.308 Ligands: CLA.20, CLA.21, CLA.22, CLA.23 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:A.308 CLA.20: 7 residues within 4Å: Chain A: V.307, H.310, M.311, I.318, G.319 Ligands: CLA.19, CLA.21 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:M.311 Hydrogen bonds: A:G.319 CLA.21: 5 residues within 4Å: Chain A: A.328 Ligands: CLA.19, CLA.20, CLA.22, CLA.41 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:A.328 CLA.22: 5 residues within 4Å: Chain A: H.329 Ligands: CLA.19, CLA.21, CLA.23, CLA.41 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:H.329 CLA.23: 5 residues within 4Å: Chain A: H.201, L.345, N.356 Ligands: CLA.19, CLA.22 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:L.345, A:N.356 CLA.24: 5 residues within 4Å: Chain A: I.366, T.546 Ligands: CLA.25, CLA.35, CLA.37 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:T.546 CLA.25: 6 residues within 4Å: Chain A: A.373, S.507 Ligands: CLA.16, CLA.24, CLA.33, CLA.35 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:A.373, A:S.507 CLA.26: 7 residues within 4Å: Chain A: S.142, S.389, H.393, W.396, W.740 Ligands: CLA.7, CLA.27 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:W.396, A:W.740 CLA.27: 3 residues within 4Å: Chain A: S.364 Ligands: CLA.17, CLA.26 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:S.364 CLA.28: 4 residues within 4Å: Chain A: F.400, G.404 Ligands: CLA.4, CLA.5 0 PLIP interactions: CLA.29: 7 residues within 4Å: Chain A: F.333, T.334, L.426, R.429, I.437, H.440 Ligands: CLA.30 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:I.437, A:H.440 CLA.30: 4 residues within 4Å: Chain A: A.436 Chain B: T.686 Ligands: CLA.29, CLA.39 1 PLIP interactions: 1 interactions with chain B, Hydrophobic interactions: B:T.686 CLA.31: 4 residues within 4Å: Chain A: I.446, F.447, F.450 Ligands: CLA.32 0 PLIP interactions: CLA.32: 9 residues within 4Å: Chain A: F.450, G.454, L.455, I.457, H.458, D.470 Ligands: CLA.31, CLA.54, CLA.55 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:I.457, A:H.458 CLA.33: 4 residues within 4Å: Chain A: T.498 Ligands: CLA.25, CLA.34, CLA.35 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:T.498 CLA.34: 6 residues within 4Å: Chain A: T.498, A.499, P.500, N.501 Ligands: CLA.15, CLA.33 4 PLIP interactions: 4 interactions with chain A, Hydrophobic interactions: A:T.498, A:A.499 Hydrogen bonds: A:N.501 Metal complexes: A:T.498 CLA.35: 8 residues within 4Å: Chain A: H.539, F.610, K.613 Ligands: CLA.24, CLA.25, CLA.33, CLA.36, CLA.37 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:H.539, A:K.613 CLA.36: 9 residues within 4Å: Chain A: Q.480, P.481, F.483, A.484, F.533, H.536, A.540 Ligands: CLA.35, CLA.37 3 PLIP interactions: 3 interactions with chain A, Hydrophobic interactions: A:H.536 Hydrogen bonds: A:F.483, A:A.484 CLA.37: 5 residues within 4Å: Chain A: L.441, A.540 Ligands: CLA.24, CLA.35, CLA.36 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:L.441 CLA.38: 4 residues within 4Å: Chain A: A.725, V.726, A.729 Ligands: PQN.40 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:A.729 CLA.39: 5 residues within 4Å: Chain A: S.439, W.443 Chain B: A.689 Ligands: CLA.30, CLA.80 1 PLIP interactions: 1 interactions with chain B, Hydrophobic interactions: B:A.689 CLA.41: 6 residues within 4Å: Chain A: A.328, H.329, R.330, P.332 Ligands: CLA.21, CLA.22 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:H.329 CLA.42: 6 residues within 4Å: Chain A: H.676, F.677, A.680 Chain B: N.586 Ligands: CL0.1, CLA.2 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B, Hydrophobic interactions: A:H.676, A:F.677, A:A.680, B:N.586 CLA.43: 8 residues within 4Å: Chain A: T.46, V.709, P.711, P.715, R.716 Chain F: E.184 Ligands: PQN.40, CLA.45 3 PLIP interactions: 3 interactions with chain A, Hydrophobic interactions: A:T.46, A:P.711, A:P.715 CLA.44: 7 residues within 4Å: Chain A: N.601 Chain B: L.652, H.655, L.656, A.659 Ligands: CLA.47, CLA.48 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A, Hydrophobic interactions: B:H.655, B:L.656, B:A.659, A:N.601 CLA.45: 11 residues within 4Å: Chain A: A.703, H.704 Chain B: S.421, S.424, W.425 Chain F: G.164, G.167, R.168 Ligands: CLA.43, CLA.72, CLA.73 1 PLIP interactions: 1 Ligand-Ligand interactions Metal complexes: CLA.45 CLA.47: 6 residues within 4Å: Chain B: Y.718, T.721, Y.722, F.725 Ligands: CL0.1, CLA.44 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:T.721, B:F.725 CLA.48: 6 residues within 4Å: Chain B: A.659, T.660, F.662, M.663, I.666 Ligands: CLA.44 4 PLIP interactions: 4 interactions with chain B, Hydrophobic interactions: B:A.659, B:F.662, B:M.663, B:I.666 CLA.49: 3 residues within 4Å: Chain B: A.29 Ligands: CLA.50, CLA.51 1 PLIP interactions: 1 interactions with chain B, Hydrophobic interactions: B:A.29 CLA.50: 9 residues within 4Å: Chain B: S.50, H.51, Q.54, L.335, A.338, L.339 Ligands: CLA.49, CLA.51, CLA.71 4 PLIP interactions: 4 interactions with chain B, Hydrophobic interactions: B:S.50, B:H.51, B:Q.54, B:L.335 CLA.51: 4 residues within 4Å: Ligands: CLA.49, CLA.50, CLA.70, CLA.71 0 PLIP interactions: CLA.52: 6 residues within 4Å: Chain B: L.60, G.64, F.67, A.91 Ligands: CLA.53, CLA.54 1 PLIP interactions: 1 interactions with chain B, Hydrophobic interactions: B:F.67 CLA.53: 10 residues within 4Å: Chain B: A.89, H.90, N.115, I.116, S.117, T.118, S.119 Ligands: CLA.52, CLA.54, CLA.69 3 PLIP interactions: 3 interactions with chain B, Hydrophobic interactions: B:H.90, B:N.115 Hydrogen bonds: B:T.118 CLA.54: 9 residues within 4Å: Chain A: A.464 Chain B: A.91, W.93, D.94, V.646 Ligands: CLA.32, CLA.52, CLA.53, CLA.55 3 PLIP interactions: 3 interactions with chain B, Hydrophobic interactions: B:D.94, B:V.646 Hydrogen bonds: B:W.93 CLA.55: 3 residues within 4Å: Chain B: P.95 Ligands: CLA.32, CLA.54 1 PLIP interactions: 1 interactions with chain B, Hydrophobic interactions: B:P.95 CLA.56: 5 residues within 4Å: Chain B: A.153, N.161, F.162, P.164 Ligands: CLA.58 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:A.153, B:P.164 CLA.57: 2 residues within 4Å: Ligands: CLA.58, CLA.63 0 PLIP interactions: CLA.58: 11 residues within 4Å: Chain B: F.48, H.51, F.52, W.168, D.171, R.175, H.178 Ligands: CLA.56, CLA.57, CLA.62, CLA.70 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:H.51, B:H.178 CLA.59: 11 residues within 4Å: Chain B: G.129, A.190, W.191, G.193, H.194, H.197, V.208, G.209, W.210, F.213 Ligands: CLA.60 4 PLIP interactions: 4 interactions with chain B, Hydrophobic interactions: B:A.190, B:H.197, B:F.213 Hydrogen bonds: B:W.210 CLA.60: 7 residues within 4Å: Chain B: L.189, A.190, T.192, G.193, V.216, G.222 Ligands: CLA.59 1 PLIP interactions: 1 interactions with chain B, Hydrophobic interactions: B:T.192 CLA.61: 6 residues within 4Å: Chain B: T.257, D.273, H.276, H.277, H.352 Ligands: CLA.62 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:H.276, B:H.277 CLA.62: 4 residues within 4Å: Chain B: S.187, S.188 Ligands: CLA.58, CLA.61 1 PLIP interactions: 1 interactions with chain B, Hydrophobic interactions: B:S.187 CLA.63: 6 residues within 4Å: Chain B: N.177, H.178, S.181, Y.292, T.294 Ligands: CLA.57 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:H.178 Hydrogen bonds: B:T.294 CLA.64: 7 residues within 4Å: Chain B: V.287, A.288, H.290, M.291, I.298, G.299, H.300 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:M.291 Hydrogen bonds: B:G.299 CLA.65: 4 residues within 4Å: Chain B: H.309, V.408 Ligands: CLA.66, CLA.82 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:H.309, B:V.408 CLA.66: 4 residues within 4Å: Chain B: H.179, A.338, S.341 Ligands: CLA.65 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:A.338, B:S.341 CLA.67: 6 residues within 4Å: Chain B: S.347, L.348, M.384 Ligands: CLA.68, CLA.77, CLA.79 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:S.347, B:M.384 CLA.68: 4 residues within 4Å: Chain B: S.355 Ligands: CLA.67, CLA.75, CLA.77 0 PLIP interactions: CLA.69: 5 residues within 4Å: Chain B: A.371, H.375, Y.378 Ligands: CLA.53, CLA.70 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:H.375, B:Y.378 CLA.70: 4 residues within 4Å: Chain B: T.346 Ligands: CLA.51, CLA.58, CLA.69 1 PLIP interactions: 1 interactions with chain B, Hydrophobic interactions: B:T.346 CLA.71: 5 residues within 4Å: Chain B: G.386, A.389, Y.556 Ligands: CLA.50, CLA.51 1 PLIP interactions: 1 interactions with chain B, Hydrophobic interactions: B:A.389 CLA.72: 3 residues within 4Å: Chain B: A.418 Ligands: CLA.45, CLA.79 1 PLIP interactions: 1 interactions with chain B, Hydrophobic interactions: B:A.418 CLA.73: 7 residues within 4Å: Chain B: W.425, L.428, F.429, F.432 Chain F: T.153 Ligands: CLA.45, CLA.74 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, Hydrophobic interactions: B:F.432, F:T.153 CLA.74: 7 residues within 4Å: Chain B: G.436, L.437, H.440 Chain G: D.35, P.36 Ligands: CLA.8, CLA.73 1 PLIP interactions: 1 interactions with chain B, Hydrophobic interactions: B:H.440 CLA.75: 4 residues within 4Å: Chain B: A.467 Ligands: CLA.68, CLA.76, CLA.77 1 PLIP interactions: 1 interactions with chain B, Hydrophobic interactions: B:A.467 CLA.76: 5 residues within 4Å: Chain B: A.485, A.486, N.489, G.490 Ligands: CLA.75 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:A.485, B:A.486 CLA.77: 6 residues within 4Å: Chain B: W.595 Ligands: CLA.67, CLA.68, CLA.75, CLA.78, CLA.79 0 PLIP interactions: CLA.78: 10 residues within 4Å: Chain B: E.457, P.458, V.459, F.460, A.461, F.518, H.521, H.522 Ligands: CLA.77, CLA.79 3 PLIP interactions: 3 interactions with chain B, Hydrophobic interactions: B:H.521 Hydrogen bonds: B:F.460, B:A.461 CLA.79: 5 residues within 4Å: Chain B: A.525 Ligands: CLA.67, CLA.72, CLA.77, CLA.78 0 PLIP interactions: CLA.80: 7 residues within 4Å: Chain B: V.680, W.694, K.695, P.698, V.699 Ligands: CLA.39, PQN.83 4 PLIP interactions: 4 interactions with chain B, Hydrophobic interactions: B:V.680, B:W.694, B:P.698 Hydrogen bonds: B:K.695 CLA.81: 3 residues within 4Å: Chain B: V.709, A.712 Ligands: PQN.83 0 PLIP interactions: CLA.82: 5 residues within 4Å: Chain B: A.308, H.309, T.310, P.311 Ligands: CLA.65 1 PLIP interactions: 1 interactions with chain B, Hydrophobic interactions: B:P.311 CLA.86: 1 residues within 4Å: Chain F: A.196 0 PLIP interactions: CLA.87: 4 residues within 4Å: Chain F: D.136, P.137, G.138, L.139 1 PLIP interactions: 1 interactions with chain F, Hydrophobic interactions: F:D.136 CLA.88: 4 residues within 4Å: Chain G: A.11, P.12 Ligands: CLA.3, PQN.40 0 PLIP interactions: CLA.89: 3 residues within 4Å: Chain G: F.21, G.24, L.25 0 PLIP interactions: CLA.91: 14 residues within 4Å: Chain H: P.50, G.51, N.52, Y.53, G.54, F.55, D.56, F.70, T.71, S.73, E.74, R.178 Ligands: CHL.90, CLA.92 9 PLIP interactions: 9 interactions with chain H, Hydrophobic interactions: H:F.55, H:D.56, H:F.70, H:S.73, H:E.74, H:R.178 Hydrogen bonds: H:Y.53, H:G.54, H:F.55 CLA.92: 2 residues within 4Å: Ligands: CLA.91, CLA.95 0 PLIP interactions: CLA.93: 9 residues within 4Å: Chain H: L.83, G.84, G.87, A.90, A.102, T.113, W.114, F.115 Ligands: CLA.94 2 PLIP interactions: 2 interactions with chain H, Hydrophobic interactions: H:A.102 Hydrogen bonds: H:F.115 CLA.94: 5 residues within 4Å: Chain H: P.103, A.112, L.126, E.130 Ligands: CLA.93 2 PLIP interactions: 2 interactions with chain H, Hydrophobic interactions: H:P.103, H:A.112 CLA.95: 6 residues within 4Å: Chain H: R.69, E.72, S.73, M.134, E.138 Ligands: CLA.92 2 PLIP interactions: 2 interactions with chain H, Hydrophobic interactions: H:M.134, H:E.138 CLA.96: 3 residues within 4Å: Chain H: K.172, K.175 Ligands: CLA.97 1 PLIP interactions: 1 interactions with chain H, Hydrophobic interactions: H:K.175 CLA.97: 1 residues within 4Å: Ligands: CLA.96 0 PLIP interactions: CLA.98: 12 residues within 4Å: Chain H: G.186, A.189, Q.190, A.193, A.201, L.202, H.205, A.212, N.213, F.214, N.217 Ligands: CLA.99 5 PLIP interactions: 5 interactions with chain H, Hydrophobic interactions: H:A.189, H:A.193, H:H.205, H:N.213, H:F.214 CLA.99: 4 residues within 4Å: Chain H: P.209, N.213 Chain K: S.121 Ligands: CLA.98 0 PLIP interactions: CLA.100: 7 residues within 4Å: Chain A: V.17, A.176 Chain I: G.79, G.80, F.81 Ligands: CLA.10, CLA.11 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain I, Hydrophobic interactions: A:A.176 Hydrogen bonds: I:F.81 CLA.101: 8 residues within 4Å: Chain I: P.62, D.64, F.65, F.67, L.87, E.91, R.222, M.225 5 PLIP interactions: 5 interactions with chain I, Hydrophobic interactions: I:E.91, I:R.222, I:M.225 Hydrogen bonds: I:F.65, I:F.67 CLA.102: 1 residues within 4Å: Ligands: CLA.107 0 PLIP interactions: CLA.103: 8 residues within 4Å: Chain I: L.100, A.103, G.104, A.107, P.108, S.128 Ligands: CLA.104, CLA.147 3 PLIP interactions: 3 interactions with chain I, Hydrophobic interactions: I:A.103, I:P.108, I:S.128 CLA.104: 4 residues within 4Å: Chain I: E.151 Ligands: CLA.103, CLA.105, CLA.158 1 PLIP interactions: 1 interactions with chain I, Hydrophobic interactions: I:E.151 CLA.105: 5 residues within 4Å: Chain I: G.129, V.130, P.144, F.148 Ligands: CLA.104 1 PLIP interactions: 1 interactions with chain I, Hydrophobic interactions: I:P.144 CLA.107: 5 residues within 4Å: Chain I: S.90, I.93, E.159 Ligands: CLA.102, CLA.112 0 PLIP interactions: CLA.108: 10 residues within 4Å: Chain I: R.96, A.191, Y.192, P.193, G.194, F.198, L.203, L.213, E.217 Ligands: CHL.106 3 PLIP interactions: 3 interactions with chain I, Hydrophobic interactions: I:R.96, I:E.217 Hydrogen bonds: I:G.194 CLA.109: 2 residues within 4Å: Chain I: K.216, K.219 1 PLIP interactions: 1 interactions with chain I, Hydrophobic interactions: I:K.219 CLA.110: 10 residues within 4Å: Chain I: L.226, A.227, G.230, A.233, M.237, N.245, H.249, I.258, N.261 Ligands: CLA.111 3 PLIP interactions: 3 interactions with chain I, Hydrophobic interactions: I:A.233, I:M.237, I:H.249 CLA.111: 3 residues within 4Å: Chain I: P.253, N.257 Ligands: CLA.110 1 PLIP interactions: 1 interactions with chain I, Hydrophobic interactions: I:P.253 CLA.112: 2 residues within 4Å: Ligands: CLA.107, CLA.113 0 PLIP interactions: CLA.113: 5 residues within 4Å: Chain I: L.160 Chain J: W.33, P.35, Y.51 Ligands: CLA.112 2 PLIP interactions: 2 interactions with chain J, Hydrophobic interactions: J:Y.51 Metal complexes: J:W.33 CLA.114: 14 residues within 4Å: Chain J: A.48, G.49, D.50, Y.51, G.52, F.53, D.54, Y.68, V.69, A.71, E.72, H.75, R.195, M.198 9 PLIP interactions: 9 interactions with chain J, Hydrophobic interactions: J:F.53, J:D.54, J:A.71, J:E.72, J:H.75, J:R.195, J:M.198 Hydrogen bonds: J:Y.51, J:F.53 CLA.115: 1 residues within 4Å: Ligands: CLA.120 0 PLIP interactions: CLA.116: 5 residues within 4Å: Chain J: L.81, A.84, G.85, A.105 Ligands: CLA.117 2 PLIP interactions: 2 interactions with chain J, Hydrophobic interactions: J:L.81, J:A.84 CLA.117: 6 residues within 4Å: Chain J: G.106, I.123, Q.124 Ligands: CLA.116, CHL.118, CLA.120 1 PLIP interactions: 1 interactions with chain J, Hydrophobic interactions: J:Q.124 CLA.119: 11 residues within 4Å: Chain J: V.74, R.77, A.131, K.134, R.135, D.138, Q.145, F.157, G.163, P.165 Ligands: CLA.121 5 PLIP interactions: 5 interactions with chain J, Hydrophobic interactions: J:A.131, J:R.135, J:D.138, J:Q.145, J:P.165 CLA.120: 7 residues within 4Å: Chain J: Q.70, A.71, G.129, E.132, W.136 Ligands: CLA.115, CLA.117 1 PLIP interactions: 1 interactions with chain J, Hydrophobic interactions: J:W.136 CLA.121: 11 residues within 4Å: Chain J: R.77, M.80, Y.164, P.165, G.166, F.170, S.176, Y.186, K.187, E.190 Ligands: CLA.119 5 PLIP interactions: 5 interactions with chain J, Hydrophobic interactions: J:R.77, J:M.80, J:Y.186, J:E.190 Hydrogen bonds: J:G.166 CLA.122: 3 residues within 4Å: Chain J: K.189, K.192 Ligands: CLA.123 1 PLIP interactions: 1 interactions with chain J, Hydrophobic interactions: J:K.192 CLA.123: 2 residues within 4Å: Chain J: K.189 Ligands: CLA.122 1 PLIP interactions: 1 interactions with chain J, Hydrophobic interactions: J:K.189 CLA.124: 13 residues within 4Å: Chain J: I.199, A.200, G.203, A.206, A.210, N.218, H.222, V.229, N.230, F.231, N.234 Ligands: CLA.125, CLA.126 4 PLIP interactions: 4 interactions with chain J, Hydrophobic interactions: J:A.206, J:A.210, J:H.222 Hydrogen bonds: J:F.231 CLA.125: 3 residues within 4Å: Chain J: P.226, N.230 Ligands: CLA.124 0 PLIP interactions: CLA.126: 4 residues within 4Å: Chain J: A.206, V.236, S.237 Ligands: CLA.124 2 PLIP interactions: 2 interactions with chain J, Hydrophobic interactions: J:S.237 Metal complexes: J:S.237 CLA.127: 4 residues within 4Å: Chain J: S.149 Chain K: W.30, L.31, P.32 1 PLIP interactions: 1 interactions with chain K, Metal complexes: K:W.30 CLA.128: 11 residues within 4Å: Chain K: A.49, G.50, N.51, F.52, G.53, F.54, D.55, Y.69, Q.70, E.73, R.197 6 PLIP interactions: 6 interactions with chain K, Hydrophobic interactions: K:F.54, K:D.55, K:E.73, K:R.197 Hydrogen bonds: K:F.52, K:F.54 CLA.129: 2 residues within 4Å: Chain K: A.72 Ligands: CLA.134 1 PLIP interactions: 1 interactions with chain K, Hydrophobic interactions: K:A.72 CLA.130: 5 residues within 4Å: Chain K: A.82, G.83, G.86, A.107 Ligands: CLA.131 1 PLIP interactions: 1 interactions with chain K, Hydrophobic interactions: K:A.82 CLA.131: 5 residues within 4Å: Chain K: G.108, V.125, Q.126 Ligands: CLA.130, CHL.132 1 PLIP interactions: 1 interactions with chain K, Hydrophobic interactions: K:Q.126 CLA.133: 6 residues within 4Å: Chain K: R.78, K.136, D.140, G.167, P.169 Ligands: CLA.135 2 PLIP interactions: 2 interactions with chain K, Hydrophobic interactions: K:D.140, K:P.169 CLA.134: 8 residues within 4Å: Chain K: Q.71, A.72, L.127, C.130, G.131, E.134, W.138 Ligands: CLA.129 3 PLIP interactions: 3 interactions with chain K, Hydrophobic interactions: K:C.130, K:E.134, K:W.138 CLA.135: 11 residues within 4Å: Chain K: R.78, M.81, Y.168, P.169, F.173, D.174, W.188, K.191, E.192 Ligands: CLA.133, CLA.137 6 PLIP interactions: 6 interactions with chain K, Hydrophobic interactions: K:R.78, K:M.81, K:D.174, K:W.188, K:K.191, K:E.192 CLA.136: 3 residues within 4Å: Chain K: K.191, K.194 Ligands: CLA.137 1 PLIP interactions: 1 interactions with chain K, Hydrophobic interactions: K:K.194 CLA.137: 3 residues within 4Å: Chain K: K.191 Ligands: CLA.135, CLA.136 1 PLIP interactions: 1 interactions with chain K, Hydrophobic interactions: K:K.191 CLA.138: 14 residues within 4Å: Chain K: L.201, A.202, G.205, A.208, Q.209, A.212, N.220, H.224, V.231, N.232, Y.233, N.236 Ligands: CLA.139, CLA.140 5 PLIP interactions: 5 interactions with chain K, Hydrophobic interactions: K:A.208, K:A.212, K:H.224, K:Y.233 Hydrogen bonds: K:Y.233 CLA.139: 4 residues within 4Å: Chain K: P.228, N.232, A.234 Ligands: CLA.138 1 PLIP interactions: 1 interactions with chain K, Hydrophobic interactions: K:P.228 CLA.140: 5 residues within 4Å: Chain K: A.208, A.212, V.238, S.239 Ligands: CLA.138 1 PLIP interactions: 1 interactions with chain K, Metal complexes: K:S.239 CLA.142: 4 residues within 4Å: Chain M: S.60, W.61, M.62, P.63 1 PLIP interactions: 1 interactions with chain M, Hydrophobic interactions: M:W.61 CLA.143: 12 residues within 4Å: Chain M: G.77, D.78, F.79, G.80, F.81, D.82, L.86, Y.96, A.97, E.100, R.220, M.223 8 PLIP interactions: 8 interactions with chain M, Hydrophobic interactions: M:F.81, M:D.82, M:A.97, M:E.100, M:R.220, M:M.223 Hydrogen bonds: M:F.79, M:F.81 CLA.144: 2 residues within 4Å: Chain M: K.214, K.217 1 PLIP interactions: 1 interactions with chain M, Hydrophobic interactions: M:K.217 CLA.145: 8 residues within 4Å: Chain M: G.228, T.235, N.243, H.247, T.254, T.255, N.259 Ligands: CLA.146 2 PLIP interactions: 2 interactions with chain M, Hydrophobic interactions: M:T.235, M:H.247 CLA.146: 7 residues within 4Å: Chain M: P.251, T.255, V.256, W.257 Chain O: A.115, V.116 Ligands: CLA.145 3 PLIP interactions: 1 interactions with chain M, 2 interactions with chain O, Hydrophobic interactions: M:P.251, O:A.115 Hydrogen bonds: O:A.115 CLA.147: 7 residues within 4Å: Chain I: P.118, A.120 Chain N: I.231, G.232, P.254 Ligands: CLA.103, CLA.158 0 PLIP interactions: CLA.148: 2 residues within 4Å: Chain N: W.35 Ligands: CLA.149 1 PLIP interactions: 1 interactions with chain N, Metal complexes: N:W.35 CLA.149: 15 residues within 4Å: Chain N: L.49, A.50, G.51, D.52, Y.53, G.54, W.55, L.60, G.61, Y.70, R.71, E.74, R.191, M.194 Ligands: CLA.148 6 PLIP interactions: 6 interactions with chain N, Hydrophobic interactions: N:E.74, N:R.191, N:M.194 Hydrogen bonds: N:Y.53, N:G.54, N:W.55 CLA.150: 2 residues within 4Å: Ligands: CLA.152, CLA.160 0 PLIP interactions: CLA.152: 9 residues within 4Å: Chain N: Q.72, S.73, Q.76, M.129, H.130, E.133, W.137 Ligands: CLA.150, CLA.160 5 PLIP interactions: 5 interactions with chain N, Hydrophobic interactions: N:Q.76, N:M.129, N:H.130, N:E.133, N:W.137 CLA.153: 11 residues within 4Å: Chain N: R.79, M.82, Y.164, P.165, G.166, F.169, D.170, L.182, E.186 Ligands: CHL.151, CLA.155 5 PLIP interactions: 5 interactions with chain N, Hydrophobic interactions: N:R.79, N:M.82, N:D.170, N:E.186 Hydrogen bonds: N:G.166 CLA.154: 6 residues within 4Å: Chain N: E.181, T.184, K.185, K.188, N.189 Ligands: CLA.155 1 PLIP interactions: 1 interactions with chain N, Hydrophobic interactions: N:K.188 CLA.155: 2 residues within 4Å: Ligands: CLA.153, CLA.154 0 PLIP interactions: CLA.156: 11 residues within 4Å: Chain N: A.199, L.202, Q.203, A.206, A.214, H.218, N.225, N.226, I.227, N.230 Ligands: CLA.157 4 PLIP interactions: 4 interactions with chain N, Hydrophobic interactions: N:A.199, N:A.206, N:H.218, N:I.227 CLA.157: 4 residues within 4Å: Chain N: P.222, F.223, N.226 Ligands: CLA.156 0 PLIP interactions: CLA.158: 4 residues within 4Å: Chain N: L.252, W.253 Ligands: CLA.104, CLA.147 0 PLIP interactions: CLA.160: 4 residues within 4Å: Chain N: T.65, W.69 Ligands: CLA.150, CLA.152 1 PLIP interactions: 1 interactions with chain N, Hydrophobic interactions: N:W.69 CLA.161: 6 residues within 4Å: Chain N: A.123, W.124 Chain O: P.212, T.216, I.217, F.218 2 PLIP interactions: 1 interactions with chain N, 1 interactions with chain O, Hydrophobic interactions: N:A.123, O:P.212 CLA.162: 4 residues within 4Å: Chain O: L.31, W.32, P.34 Ligands: CLA.163 2 PLIP interactions: 2 interactions with chain O, Hydrophobic interactions: O:W.32 Metal complexes: O:W.32 CLA.163: 12 residues within 4Å: Chain O: L.46, G.48, D.49, F.50, G.51, F.52, F.67, K.68, E.71, H.74, R.181 Ligands: CLA.162 7 PLIP interactions: 7 interactions with chain O, Hydrophobic interactions: O:F.52, O:K.68, O:E.71, O:H.74, O:R.181 Hydrogen bonds: O:F.50, O:F.52 CLA.164: 0 residues within 4Å: (No contacts) 0 PLIP interactions: CLA.165: 5 residues within 4Å: Chain O: A.80, A.81, G.84, A.100 Ligands: CHL.166 2 PLIP interactions: 2 interactions with chain O, Hydrophobic interactions: O:A.81, O:A.100 CLA.169: 4 residues within 4Å: Chain O: E.171, V.174, K.175, K.178 1 PLIP interactions: 1 interactions with chain O, Hydrophobic interactions: O:K.178 CLA.170: 6 residues within 4Å: Chain O: A.221, A.222, V.223, V.224, P.257 Ligands: CLA.171 4 PLIP interactions: 4 interactions with chain O, Hydrophobic interactions: O:A.222, O:V.223, O:P.257 Metal complexes: O:V.223 CLA.171: 3 residues within 4Å: Chain O: W.256, P.257 Ligands: CLA.170 0 PLIP interactions:

2 x PQN: PHYLLOQUINONE(Non-covalent)

PQN.40: 11 residues within 4Å: Chain A: M.684, F.685, S.688, R.690, W.693, A.717, L.718, G.723 Ligands: CLA.38, CLA.43, CLA.88 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.690, A:L.718 Hydrogen bonds: A:L.718 PQN.83: 10 residues within 4Å: Chain B: S.667, W.668, R.669, W.672, V.699, A.700, L.701, A.706 Ligands: CLA.80, CLA.81 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:R.669, B:W.672, B:L.701, B:A.706 Hydrogen bonds: B:L.701

3 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.46: 8 residues within 4Å: Chain A: C.575, G.577, P.578, C.584 Chain B: C.560, P.563, T.568, C.569 0 PLIP interactions: SF4.84: 8 residues within 4Å: Chain C: C.21, L.23, C.48, G.50, C.51, K.52, R.53, C.54 0 PLIP interactions: SF4.85: 10 residues within 4Å: Chain C: C.11, I.12, G.13, C.14, T.15, Q.16, C.17, A.40, C.58, S.64 0 PLIP interactions:

10 x CHL: CHLOROPHYLL B(Non-covalent)

CHL.90: 9 residues within 4Å: Chain H: G.33, N.34, W.35, P.37 Chain K: A.135, K.136, Q.139, S.152 Ligands: CLA.91 2 PLIP interactions: 1 interactions with chain K, 1 interactions with chain H, Hydrophobic interactions: K:A.135 Metal complexes: H:W.35 CHL.106: 7 residues within 4Å: Chain I: A.158, R.161, R.162, D.165, F.184, A.191 Ligands: CLA.108 3 PLIP interactions: 3 interactions with chain I, Hydrophobic interactions: I:A.158, I:R.162, I:D.165 CHL.118: 4 residues within 4Å: Chain J: Y.103, D.104, K.107 Ligands: CLA.117 3 PLIP interactions: 3 interactions with chain J, Hydrophobic interactions: J:Y.103, J:K.107 Hydrogen bonds: J:K.107 CHL.132: 6 residues within 4Å: Chain K: Y.105, D.106, G.108, K.109, I.112 Ligands: CLA.131 4 PLIP interactions: 4 interactions with chain K, Hydrophobic interactions: K:Y.105, K:I.112 Hydrogen bonds: K:G.108, K:K.109 CHL.141: 8 residues within 4Å: Chain L: G.37, N.38, W.39, P.41 Chain M: A.158, W.159, I.162, P.178 3 PLIP interactions: 2 interactions with chain M, 1 interactions with chain L, Hydrophobic interactions: M:I.162, M:P.178 Metal complexes: L:W.39 CHL.151: 6 residues within 4Å: Chain N: R.135, R.136, D.139, G.163 Ligands: CLA.153, CHL.159 2 PLIP interactions: 2 interactions with chain N, Hydrophobic interactions: N:R.136, N:D.139 CHL.159: 8 residues within 4Å: Chain N: V.146, N.147, D.149, F.152, N.155, K.156, V.157 Ligands: CHL.151 3 PLIP interactions: 3 interactions with chain N, Hydrophobic interactions: N:D.149, N:F.152, N:N.155 CHL.166: 7 residues within 4Å: Chain O: A.100, G.101, S.106, L.113, E.117 Ligands: CLA.165, CHL.167 2 PLIP interactions: 2 interactions with chain O, Hydrophobic interactions: O:S.106, O:E.117 CHL.167: 5 residues within 4Å: Chain O: Y.98, N.99, G.101, K.102 Ligands: CHL.166 2 PLIP interactions: 2 interactions with chain O, Hydrogen bonds: O:G.101, O:K.102 CHL.168: 7 residues within 4Å: Chain O: V.73, R.76, W.77, R.127, R.128, D.131, G.155 2 PLIP interactions: 2 interactions with chain O, Hydrophobic interactions: O:R.128, O:D.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gerle, C. et al., Three structures of PSI-LHCI from Chlamydomonas reinhardtii suggest a resting state re-activated by ferredoxin. Biochim Biophys Acta Bioenerg (2023)

Release Date

2023-02-22

Peptides

Photosystem I P700 chlorophyll a apoprotein A1: A
Photosystem I P700 chlorophyll a apoprotein A2: B
Photosystem I iron-sulfur center: C
Photosystem I reaction center subunit II, chloroplastic: D
Photosystem I reaction center subunit IV, chloroplastic: E
Photosystem I reaction center subunit III, chloroplastic: F
Photosystem I reaction center subunit IX: G
Chlorophyll a-b binding protein, chloroplastic: H
Chlorophyll a-b binding protein, chloroplastic: I
Chlorophyll a-b binding protein, chloroplastic: J
Chlorophyll a-b binding protein, chloroplastic: K
Chlorophyll a-b binding protein, chloroplastic: L
Chlorophyll a-b binding protein, chloroplastic: M
Chlorophyll a-b binding protein, chloroplastic: N
Chlorophyll a-b binding protein, chloroplastic: O

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
J

H
1

I
3

J
7

K
8

L
Z

M
4

N
5

O
6

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Photosystem I P700 chlorophyll a apoprotein A1

Photosystem I P700 chlorophyll a apoprotein A2

Photosystem I iron-sulfur center

Photosystem I reaction center subunit II, chloroplastic

Photosystem I reaction center subunit IV, chloroplastic

Photosystem I reaction center subunit III, chloroplastic

Photosystem I reaction center subunit IX

Chlorophyll a-b binding protein, chloroplastic

Chlorophyll a-b binding protein, chloroplastic

Chlorophyll a-b binding protein, chloroplastic

Chlorophyll a-b binding protein, chloroplastic

Chlorophyll a-b binding protein, chloroplastic

Chlorophyll a-b binding protein, chloroplastic

Chlorophyll a-b binding protein, chloroplastic

Chlorophyll a-b binding protein, chloroplastic

Related Entries With Identical Sequence