SMTL ID : 7wzc.1

An open conformation Form2 of switch II for RhoA GDP-bound state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: A.19, V.39, P.40 Ligands: GDP.2 No protein-ligand interaction detected (PLIP)

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 19 residues within 4Å: Chain A: D.17, G.18, A.19, V.20, G.21, K.22, T.23, S.24, F.34, P.35, N.121, K.122, D.124, L.125, S.164, A.165, K.166 Ligands: GOL.1, MG.3 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:D.17, A:A.19, A:V.20, A:G.21, A:K.22, A:T.23, A:S.24, A:S.24, A:N.121, A:K.122, A:K.122, A:A.165, A:K.166 Water bridges: A:K.22, A:T.64, A:D.124, A:K.166 Salt bridges: A:K.22, A:D.124 pi-Stacking: A:F.34, A:F.34

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: T.23, T.41 Ligands: GDP.2 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.23, A:T.41, H2O.1, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, H. et al., A RhoA structure with switch II flipped outward revealed the conformational dynamics of switch II region. J.Struct.Biol. (2023)

Release Date

2023-02-22

Peptides

Transforming protein RhoA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transforming protein RhoA

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