SMTL ID : 7wzg.1

Cypemycin N-terminal methyltransferase CypM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 17 residues within 4Å: Chain A: Y.35, S.39, G.67, C.68, G.69, V.72, S.73, D.88, A.89, S.90, G.111, D.112, F.113, S.128, T.131, L.134, E.218 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:Y.35, A:S.39, A:G.67, A:S.73, A:S.73, A:S.73, A:A.89, A:F.113, A:R.114, A:S.128 Water bridges: A:G.71, A:V.72, A:S.93 pi-Stacking: A:F.113, A:F.113 SAH.2: 17 residues within 4Å: Chain B: Y.35, S.39, G.67, C.68, G.69, V.72, S.73, D.88, A.89, S.90, G.111, D.112, F.113, R.114, S.128, T.131, L.134 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.39, B:S.73, B:S.73, B:A.89, B:D.112, B:D.112, B:F.113, B:S.128, B:S.128 Water bridges: B:T.70 pi-Stacking: B:F.113 SAH.3: 17 residues within 4Å: Chain C: Y.35, S.39, G.67, C.68, G.69, V.72, S.73, D.88, A.89, S.90, G.111, D.112, F.113, R.114, S.128, T.131, L.134 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:S.39, C:S.73, C:S.73, C:S.73, C:A.89, C:D.112, C:F.113, C:S.128, C:S.128 Water bridges: C:G.71, C:V.72, C:S.93 pi-Stacking: C:F.113 SAH.4: 17 residues within 4Å: Chain D: Y.35, S.39, G.67, C.68, G.69, V.72, S.73, D.88, A.89, S.90, G.111, D.112, F.113, R.114, S.128, T.131, L.134 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:S.39, D:S.73, D:S.73, D:S.73, D:A.89, D:D.112, D:F.113, D:S.128, D:S.128 Water bridges: D:T.70, D:V.72, D:V.72 pi-Stacking: D:F.113 SAH.5: 18 residues within 4Å: Chain E: Y.35, S.39, G.67, C.68, G.69, V.72, S.73, D.88, A.89, S.90, G.111, D.112, F.113, R.114, S.128, T.131, L.134, E.218 14 PLIP interactions: 14 interactions with chain E Hydrogen bonds: E:S.39, E:S.73, E:S.73, E:S.73, E:A.89, E:D.112, E:D.112, E:F.113, E:S.128, E:S.128 Water bridges: E:G.71, E:V.72, E:S.128 pi-Stacking: E:F.113 SAH.6: 15 residues within 4Å: Chain F: Y.35, S.39, G.67, C.68, G.69, V.72, S.73, D.88, A.89, S.90, D.112, F.113, S.128, T.131, L.134 12 PLIP interactions: 12 interactions with chain F Hydrogen bonds: F:S.39, F:S.73, F:S.73, F:S.73, F:A.89, F:D.112, F:F.113, F:S.128, F:S.128 Water bridges: F:G.71, F:S.128 pi-Stacking: F:F.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Duan, S.Y., Structural and mechanism analysis of cypm. To Be Published

Release Date

2023-02-22

Peptides

Cypemycin N-terminal methyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Cypemycin N-terminal methyltransferase