SMTL ID : 7x1w.1

Cryo-EM structure of human ABCD1 E630Q in the presence of ATP in inward-facing state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 16 residues within 4Å: Chain A: N.203, T.501, S.503, E.505, P.526, N.527, G.528, G.530, K.531, S.532, S.533, R.536, Q.562, Q.648, H.677 Chain B: N.527 15 PLIP interactions: 2 interactions with chain B, 13 interactions with chain A Hydrogen bonds: B:N.527, B:N.527, A:N.203, A:G.530, A:S.532, A:S.532, A:S.533, A:R.536, A:Q.562, A:Q.562, A:Q.648 Salt bridges: A:K.531, A:R.536, A:H.677 pi-Stacking: A:W.542 ATP.2: 16 residues within 4Å: Chain A: N.527 Chain B: N.203, T.501, P.502, S.503, E.505, P.526, N.527, G.530, K.531, S.532, S.533, R.536, Q.562, Q.648, H.677 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.203, B:T.501, B:G.530, B:S.532, B:S.532, B:S.533, B:Q.562, B:Q.562, B:Q.648, B:Q.648, A:N.527 Salt bridges: B:K.531, B:R.536 pi-Stacking: B:W.542

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiong, C. et al., Structural insights into substrate recognition and translocation of human peroxisomal ABC transporter ALDP. Signal Transduct Target Ther (2023)

Release Date

2023-03-22

Peptides

ATP-binding cassette sub-family D member 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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ATP-binding cassette sub-family D member 1

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