SMTL ID : 7x1x.1

Crystal Structure of cis-4,5-dihydrodiol phthalate dehydrogenase in complex with NAD+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.77 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: R.44, A.45, V.55 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.44, A:V.55 GOL.2: 8 residues within 4Å: Chain A: I.111, R.115, H.120, L.121, P.361, D.364, G.365, V.366 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.115, A:H.120, A:L.121, A:G.365, A:V.366 GOL.4: 10 residues within 4Å: Chain B: I.111, R.115, V.119, H.120, L.121, K.360, P.361, D.364, G.365, V.366 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.115, B:R.115, B:H.120, B:L.121, B:G.365, B:V.366

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 22 residues within 4Å: Chain A: G.13, L.14, G.15, R.16, A.17, L.20, D.38, P.39, R.40, A.74, S.75, P.76, H.77, F.79, H.80, Q.83, E.97, K.98, P.99, H.125, H.184, R.344 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.20 Hydrogen bonds: A:L.14, A:R.16, A:A.17, A:R.40, A:R.40, A:H.77, A:H.77, A:Q.83, A:H.125, A:H.125, A:R.344, A:R.344 NAD.5: 22 residues within 4Å: Chain B: G.13, L.14, G.15, R.16, A.17, L.20, D.38, P.39, R.40, A.74, S.75, P.76, H.77, F.79, H.80, Q.83, E.97, K.98, P.99, H.125, H.184, R.344 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.20 Hydrogen bonds: B:L.14, B:R.16, B:A.17, B:R.40, B:R.40, B:H.77, B:H.77, B:Q.83, B:H.125, B:R.344, B:R.344

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mahto, J.K. et al., Conformational flexibility enables catalysis of phthalate cis-4,5-dihydrodiol dehydrogenase. Arch.Biochem.Biophys. (2022)

Release Date

2022-09-14

Peptides

4,5-dihydroxyphthalate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

4,5-dihydroxyphthalate dehydrogenase

Related Entries With Identical Sequence