SMTL ID : 7x6w.1 (2 other biounits)

SFTSV 2 fold hexamer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG.1: 5 residues within 4Å: Chain A: H.31, N.33, S.35, A.36, G.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.33 NAG-NAG.3: 5 residues within 4Å: Chain C: H.31, N.33, S.35, A.36, G.37 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.33 NAG-NAG.5: 5 residues within 4Å: Chain E: H.31, N.33, S.35, A.36, G.37 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.33 NAG-NAG.7: 5 residues within 4Å: Chain G: H.31, N.33, S.35, A.36, G.37 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.33 NAG-NAG.9: 5 residues within 4Å: Chain I: H.31, N.33, S.35, A.36, G.37 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:N.33 NAG-NAG.11: 5 residues within 4Å: Chain K: H.31, N.33, S.35, A.36, G.37 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:N.33

6 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.2: 6 residues within 4Å: Chain A: H.40, L.41, H.56, S.59, W.60, N.63 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.40 NAG-NAG-MAN.4: 6 residues within 4Å: Chain C: H.40, L.41, H.56, S.59, W.60, N.63 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.40 NAG-NAG-MAN.6: 6 residues within 4Å: Chain E: H.40, L.41, H.56, S.59, W.60, N.63 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:H.40 NAG-NAG-MAN.8: 6 residues within 4Å: Chain G: H.40, L.41, H.56, S.59, W.60, N.63 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:H.40 NAG-NAG-MAN.10: 6 residues within 4Å: Chain I: H.40, L.41, H.56, S.59, W.60, N.63 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:H.40 NAG-NAG-MAN.12: 6 residues within 4Å: Chain K: H.40, L.41, H.56, S.59, W.60, N.63 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:H.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sun, Z. et al., Architecture of severe fever with thrombocytopenia syndrome virus. Protein Cell (2023)

Release Date

2023-07-19

Peptides

Envelopment polyprotein: ACEGIK
Envelopment polyprotein: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

B
B

D
B

F
B

H
B

J
B

L
B

Envelopment polyprotein

Envelopment polyprotein

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