SMTL ID : 7x8j.2 (1 other biounit)

Arabidopsis GDP-D-mannose pyrophosphorylase (VTC1) structure (unliganded)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: T.230, R.233 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.233 SO4.2: 4 residues within 4Å: Chain A: S.307, S.308, E.324, N.325 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.307, A:S.307, A:S.308, A:N.325 SO4.3: 2 residues within 4Å: Chain A: S.336, D.337 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.337, A:D.337 Salt bridges: A:K.301 SO4.4: 4 residues within 4Å: Chain A: T.88, S.195, E.197, K.198 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.88, A:S.195, A:E.197 Salt bridges: A:K.198 SO4.5: 4 residues within 4Å: Chain A: E.351, I.352, K.353, S.354 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.351, A:K.353, A:S.354 SO4.6: 1 residues within 4Å: Chain A: R.296 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.296 SO4.7: 4 residues within 4Å: Chain A: K.242, S.243, P.244, A.245 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, C. et al., Crystal Structures of Arabidopsis thaliana GDP-D-Mannose Pyrophosphorylase VITAMIN C DEFECTIVE 1. Front Plant Sci (2022)

Release Date

2022-05-18

Peptides

Mannose-1-phosphate guanylyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Mannose-1-phosphate guanylyltransferase 1

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