SMTL ID : 7x8w.1

The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab354

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: F.338, G.339, F.342, N.343, V.367, L.368 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.367

1 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUC.2: 14 residues within 4Å: Chain A: T.478, P.479, C.480, N.481, V.483, F.486, C.488 Chain B: S.84, N.85, R.88, Q.91 Chain C: Y.119, N.122, N.123 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.481, A:P.479, A:P.479, A:N.481, A:N.481

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takeshita, M. et al., Potent SARS-CoV-2 neutralizing antibodies with therapeutic effects in two animal models. Iscience (2022)

Release Date

2022-12-07

Peptides

Spike glycoprotein: A
Ab354 heavy chain: B
Ab354 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike glycoprotein

Ab354 heavy chain

Ab354 light chain

Related Entries With Identical Sequence