SMTL ID : 7x96.1

The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab847

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUC.1: 16 residues within 4Å: Chain A: F.338, G.339, F.342, N.343, V.367, L.368, F.374 Chain B: G.52, Y.53, T.54, Y.58, I.126, V.128, L.129, R.131 Chain C: T.82 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:Y.53, B:I.126 Hydrogen bonds: B:G.52, C:T.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takeshita, M. et al., Potent neutralizing broad-spectrum antibody against SARS-CoV-2 generated from dual-antigen-specific B cells from convalescents. Iscience (2023)

Release Date

2023-03-22

Peptides

Spike glycoprotein: A
Ab847 heavy chain: B
Ab847 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
L

Spike glycoprotein

Ab847 heavy chain

Ab847 light chain

Related Entries With Identical Sequence