SMTL ID : 7xbi.1

The crystal structure of human TrkA kinase bound to the inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

monomer

Ligands

1 x CVY: 4-[[2-fluoranyl-5-(trifluoromethyl)phenyl]carbamoylamino]-~{N}-[3-(1-methylpyrazol-4-yl)-1~{H}-indazol-5-yl]-2-(trifluoromethyl)benzamide(Non-covalent)

CVY.1: 26 residues within 4Å: Chain A: L.32, V.40, A.58, K.60, E.76, L.79, L.80, L.83, I.88, V.89, F.105, E.106, Y.107, M.108, R.109, H.110, G.111, L.157, F.162, H.164, L.173, I.182, G.183, D.184, F.185, S.188 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:A.58, A:L.79, A:L.80, A:L.83, A:F.105, A:F.105, A:F.162, A:D.184, A:F.185 Hydrogen bonds: A:E.76, A:E.76, A:E.106, A:M.108, A:D.184

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: R.170, F.185, M.187, S.188, R.189, Y.192, Y.196 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, C.Y. et al., The crystal structure of human TrkA kinase bound to the inhibitor. To be published

Release Date

2023-03-29

Peptides

High affinity nerve growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

High affinity nerve growth factor receptor

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