SMTL ID : 7xc4.1

Crystal structure of SARS-CoV-2 NSP3 Macrodomain 3 (SARS-unique domain-M) in complex with Oxaprozin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x BJ6: 3-(4,5-diphenyl-1,3-oxazol-2-yl)propanoic acid(Non-covalent)

BJ6.1: 6 residues within 4Å: Chain A: V.29, K.46, I.47, Q.48, E.49, T.62 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.29, A:V.29, A:I.47, A:E.49 Salt bridges: A:K.46 BJ6.2: 4 residues within 4Å: Chain B: V.29, I.47, Q.48, E.49 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.29, B:V.29, B:V.29, B:I.47, B:E.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Two Binding Sites of SARS-CoV-2 Macrodomain 3 Probed by Oxaprozin and Meclomen. J.Med.Chem. (2022)

Release Date

2022-11-23

Peptides

Papain-like protease nsp3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Papain-like protease nsp3