SMTL ID : 7xdm.1

ChCODH2 A559W mutant in anaerobic condition

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-dimer

Ligands

2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 12 residues within 4Å: Chain A: C.68, H.70, C.71, Q.73, G.74, C.76, G.88, I.89, C.90, A.92, R.100, M.219 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.68, A:C.71, A:C.76, A:C.90 SF4.4: 12 residues within 4Å: Chain B: C.68, H.70, C.71, Q.73, G.74, C.76, G.88, I.89, C.90, A.92, R.100, M.219 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.68, B:C.71, B:C.76, B:C.90

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.2: 8 residues within 4Å: Chain A: C.59, F.61, G.62, C.67 Chain B: C.59, C.67, R.69 Ligands: FES.5 2 PLIP interactions: 2 interactions with chain A, Metal complexes: A:C.59, A:C.67 FES.5: 8 residues within 4Å: Chain A: C.59, C.67, R.69 Chain B: C.59, F.61, G.62, C.67 Ligands: FES.2 2 PLIP interactions: 2 interactions with chain B, Metal complexes: B:C.59, B:C.67

2 x NFS: FE(4)-NI(1)-S(5) CLUSTER(Non-covalent)

NFS.3: 13 residues within 4Å: Chain A: H.113, H.281, C.314, C.315, S.332, C.353, G.465, C.466, C.496, C.546, M.580, H.581, K.583 7 PLIP interactions: 7 interactions with chain A, Metal complexes: A:H.281, A:C.315, A:C.353, A:C.466, A:C.496, A:C.546, A:C.546 NFS.6: 13 residues within 4Å: Chain B: H.113, H.281, C.314, C.315, S.332, C.353, G.465, C.466, C.496, C.546, M.580, H.581, K.583 7 PLIP interactions: 7 interactions with chain B, Metal complexes: B:H.281, B:C.315, B:C.353, B:C.466, B:C.496, B:C.546, B:C.546

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S.M. et al., O2-tolerant CO dehydrogenase via tunnel redesign for the removal of CO from industrial flue gas. Nat Catal (2022)

Release Date

2022-10-19

Peptides

Carbon monoxide dehydrogenase 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Carbon monoxide dehydrogenase 2

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