SMTL ID : 7xe4.1

structure of a membrane-bound glycosyltransferase

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.1849, T.1851, G.1852 No protein-ligand interaction detected (PLIP)

7 x DD9: nonane(Non-functional Binders)(Non-covalent)

DD9.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) DD9.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) DD9.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) DD9.5: 2 residues within 4Å: Chain A: A.1563 Ligands: HP6.18 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.1563 DD9.6: 1 residues within 4Å: Chain A: F.639 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.639, A:F.639 DD9.7: 1 residues within 4Å: Chain A: M.569 No protein-ligand interaction detected (PLIP) DD9.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

6 x D10: DECANE(Non-functional Binders)(Non-covalent)

D10.9: 1 residues within 4Å: Ligands: HP6.18 No protein-ligand interaction detected (PLIP) D10.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) D10.11: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) D10.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) D10.13: 1 residues within 4Å: Chain A: W.1468 No protein-ligand interaction detected (PLIP) D10.14: 1 residues within 4Å: Chain A: F.548 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.548

1 x C14: TETRADECANE(Non-covalent)

C14.15: 4 residues within 4Å: Chain A: Q.1309, M.1310, P.1567, Y.1571 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.1567, A:Y.1571

7 x HP6: HEPTANE(Non-functional Binders)(Non-covalent)

HP6.16: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) HP6.17: 1 residues within 4Å: Chain A: F.550 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.550 HP6.18: 3 residues within 4Å: Chain A: L.1306 Ligands: DD9.5, D10.9 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.1306 HP6.19: 1 residues within 4Å: Chain A: F.474 No protein-ligand interaction detected (PLIP) HP6.20: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) HP6.21: 1 residues within 4Å: Chain A: F.550 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.550, A:F.550 HP6.22: 1 residues within 4Å: Chain A: W.663 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.663

3 x D12: DODECANE(Non-functional Binders)(Non-covalent)

D12.23: 1 residues within 4Å: Ligands: D12.24 No protein-ligand interaction detected (PLIP) D12.24: 1 residues within 4Å: Ligands: D12.23 No protein-ligand interaction detected (PLIP) D12.25: 2 residues within 4Å: Chain A: Y.622, W.625 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.622

1 x XKP: (11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate(Non-covalent)

XKP.26: 6 residues within 4Å: Chain A: Y.1451, A.1454, H.1654, F.1658, R.1684, A.1742 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.1454, A:F.1658, A:A.1742 Salt bridges: A:R.1684

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, X. et al., Structural and mechanistic insights into fungal beta-1,3-glucan synthase FKS1. Nature (2023)

Release Date

2023-03-29

Peptides

1,3-beta-glucan synthase component FKS1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Membrane

We predict this structure to be a membrane protein.
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1,3-beta-glucan synthase component FKS1

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