SMTL ID : 7xea.1

T4 lysozyme mutant-S44C/C54T/N68C/A93C/C97A/T115C, DMSO 40%, and then backsoaking

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: R.95, T.155, G.156 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.95, A:R.95, A:G.156 Water bridges: A:D.92 GOL.2: 5 residues within 4Å: Chain A: G.30, H.31, L.32, D.70, F.104 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.31, A:L.32 Water bridges: A:V.103, A:F.104

4 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: K.19, D.20 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.20 NA.4: 4 residues within 4Å: Chain A: R.125, W.126, D.127, E.128 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.125, A:D.127, A:E.128 NA.5: 2 residues within 4Å: Chain A: R.125, E.128 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.125, A:E.128 NA.6: 6 residues within 4Å: Chain A: I.29, H.31, L.66, F.67, D.70, F.104 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.70 Water bridges: A:I.29

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 4 residues within 4Å: Chain A: T.142, P.143, N.144, R.145 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain A: K.48 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hiromoto, T. et al., Creation of Cross-Linked Crystals With Intermolecular Disulfide Bonds Connecting Symmetry-Related Molecules Allows Retention of Tertiary Structure in Different Solvent Conditions. Front Mol Biosci (2022)

Release Date

2023-03-22

Peptides

Endolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endolysin

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