SMTL ID : 7xey.1

EDS1-PAD4 complexed with pRib-ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: L.436, K.440, Y.473, K.478, T.482, G.489, R.490, P.491, T.492, R.493 Chain B: K.379, K.380, Y.383, F.387 Ligands: RP5.2 21 PLIP interactions: 14 interactions with chain A, 7 interactions with chain B Hydrogen bonds: A:T.482, A:T.492, A:T.492, A:T.492, A:R.493, A:R.493, B:K.379, B:K.380 Water bridges: A:D.433, A:K.440, A:K.440, A:D.481, A:D.481, A:R.493, B:K.379, B:K.379, B:K.379 Salt bridges: A:K.440, A:K.440 pi-Stacking: B:Y.383, B:Y.383

1 x RP5: 5-O-phosphono-beta-D-ribofuranose(Non-covalent)

RP5.2: 11 residues within 4Å: Chain A: R.425, D.469, N.472, Y.473, Y.485, G.489, P.491 Chain B: L.311, R.314, F.387 Ligands: ADP.1 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.469, A:N.472, A:Y.473 Water bridges: A:N.422, A:R.425, B:R.314 Salt bridges: A:R.425, B:R.314

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 5 residues within 4Å: Chain A: E.416, F.419 Chain B: E.316, W.319, K.347 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.316, B:K.347, B:K.347

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, S. et al., Identification and receptor mechanism of TIR-catalyzed small molecules in plant immunity. Science (2022)

Release Date

2022-07-13

Peptides

Protein EDS1: A
Lipase-like PAD4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein EDS1

Lipase-like PAD4

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