SMTL ID : 7xft.1

MucP PDZ2 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.21 Å

Oligo State

homo-dimer

Ligands

2 x VAL: VALINE(Non-covalent)

VAL.1: 10 residues within 4Å: Chain A: W.38, V.41, V.42, V.45, R.46, G.81, Y.82, M.83, G.84, A.85 9 PLIP interactions: 7 interactions with chain A, 2 Ligand-Ligand interactions Hydrophobic interactions: A:V.45, A:R.46 Hydrogen bonds: A:M.83, A:G.84, A:A.85, A:A.85, A:A.85, V.1 Water bridges: V.1 VAL.7: 10 residues within 4Å: Chain B: W.38, V.41, V.42, V.45, R.46, G.81, Y.82, M.83, G.84, A.85 9 PLIP interactions: 2 Ligand-Ligand interactions, 7 interactions with chain B Hydrogen bonds: V.7, B:M.83, B:G.84, B:A.85, B:A.85, B:A.85 Water bridges: V.7 Hydrophobic interactions: B:V.45, B:R.46

10 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: L.58, D.60, G.61 Chain B: L.58 Ligands: NA.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.61 Water bridges: A:D.60, A:D.60 NA.3: 5 residues within 4Å: Chain A: Q.54, L.55, D.65, V.66, A.67 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.66 NA.4: 5 residues within 4Å: Chain A: Q.28, V.63 Chain B: P.4, P.5, R.26 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.28, B:R.26 NA.5: 5 residues within 4Å: Chain A: P.15, A.18, A.19, L.68, E.69 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.15, A:E.69 NA.6: 3 residues within 4Å: Chain A: D.43, R.46, A.47 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.43 NA.8: 5 residues within 4Å: Chain A: L.58 Chain B: L.58, D.60, G.61 Ligands: NA.2 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.61 Water bridges: B:D.60, B:D.60 NA.9: 5 residues within 4Å: Chain B: Q.54, L.55, D.65, V.66, A.67 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.66 NA.10: 5 residues within 4Å: Chain A: P.4, P.5, R.26 Chain B: Q.28, V.63 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.28, A:R.26 NA.11: 5 residues within 4Å: Chain B: P.15, A.18, A.19, L.68, E.69 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.15, B:E.69 NA.12: 3 residues within 4Å: Chain B: D.43, R.46, A.47 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lou, X. et al., MucP PDZ2 domain. To Be Published

Release Date

2023-04-05

Peptides

Putative zinc metalloprotease PA3649: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative zinc metalloprotease PA3649