SMTL ID : 7xgt.1

Crystal structure of rice OsRNase ZS1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: K.149, F.151, Y.165, D.217, N.218, A.219, D.220, V.221 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.218, A:D.220, A:V.221 EDO.4: 8 residues within 4Å: Chain B: K.149, F.151, Y.165, D.217, N.218, A.219, D.220, V.221 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.218, B:D.220, B:V.221

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.76, H.78, H.155, D.207 Ligands: ZN.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.76, A:H.78, A:H.155, A:D.207, H2O.5 ZN.3: 5 residues within 4Å: Chain A: D.80, H.81, D.207, H.270 Ligands: ZN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.80, A:H.81, A:D.207, A:H.270, H2O.4 ZN.5: 5 residues within 4Å: Chain B: H.76, H.78, H.155, D.207 Ligands: ZN.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.76, B:H.78, B:H.155, B:D.207, H2O.9 ZN.6: 6 residues within 4Å: Chain B: G.42, D.80, H.81, D.207, H.270 Ligands: ZN.5 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.80, B:H.81, B:D.207, B:H.270, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mao, Y. et al., Crystal structure of rice OsRNase ZS1. To Be Published

Release Date

2023-04-12

Peptides

RNase ZS1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RNase ZS1