SMTL ID : 7xhh.1

High-resolution X-ray cocrystal structure of USP7 in complex with X4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x DYO: 3-[4-(aminomethyl)phenyl]-6-[[1-[[2-chloranyl-4-(1,2,4-oxadiazol-3-yl)phenyl]methyl]-4-oxidanyl-piperidin-4-yl]methyl]-2-methyl-pyrazolo[4,3-d]pyrimidin-7-one(Non-covalent)

DYO.1: 18 residues within 4Å: Chain A: Y.18, D.89, V.90, Q.91, Q.145, Q.199, L.200, M.201, R.202, F.203, N.212, K.214, H.250, D.253, N.254, H.255, Y.259, Y.308 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.18, A:Q.145, A:K.214, A:Y.308 Hydrogen bonds: A:V.90, A:Q.91, A:Q.145, A:R.202, A:F.203, A:H.255 pi-Stacking: A:H.250, A:H.255 DYO.2: 18 residues within 4Å: Chain B: Y.18, D.89, V.90, Q.91, Q.145, Q.199, L.200, M.201, R.202, F.203, N.212, K.214, H.250, D.253, N.254, H.255, Y.259, Y.308 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:Q.145, B:K.214, B:Y.308 Hydrogen bonds: B:D.89, B:D.89, B:V.90, B:Q.91, B:Q.145, B:R.202, B:F.203, B:H.255 pi-Stacking: B:F.203, B:H.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wen, X.A., High-resolution X-ray cocrystal structure of USP7 in complex with X4. To Be Published

Release Date

2023-04-19

Peptides

Ubiquitin carboxyl-terminal hydrolase 7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ubiquitin carboxyl-terminal hydrolase 7